miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 3' -56.2 NC_003521.1 + 66567 0.71 0.758243
Target:  5'- aCCUGGCgCGCCagcGCAAcGUGCGUCUg- -3'
miRNA:   3'- gGGACCG-GCGGa--CGUU-CGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 135953 0.7 0.767525
Target:  5'- gCCUcGGgCGCCUGCGacaugaGGCACGUCc-- -3'
miRNA:   3'- gGGA-CCgGCGGACGU------UCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 181382 0.7 0.767525
Target:  5'- aCUCgGGUCGCCUGguGGCGCAauUCg-- -3'
miRNA:   3'- -GGGaCCGGCGGACguUCGUGU--AGaac -5'
13957 3' -56.2 NC_003521.1 + 223909 0.7 0.776692
Target:  5'- gCgCUGGCaGCUggGCAGGCGCAUCgUGg -3'
miRNA:   3'- -GgGACCGgCGGa-CGUUCGUGUAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 150741 0.7 0.791988
Target:  5'- gUCCUgGGCCGgCUGCccggacugcuccgcGAGCGCGUCg-- -3'
miRNA:   3'- -GGGA-CCGGCgGACG--------------UUCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 75257 0.7 0.794647
Target:  5'- gCCgaggagGGCCGgCUGCAcauGCACGUCa-- -3'
miRNA:   3'- gGGa-----CCGGCgGACGUu--CGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 70076 0.7 0.803418
Target:  5'- gCCUGuGUCGCCucaagUGCGAGCGuCAUCUc- -3'
miRNA:   3'- gGGAC-CGGCGG-----ACGUUCGU-GUAGAac -5'
13957 3' -56.2 NC_003521.1 + 178882 0.7 0.803418
Target:  5'- gCgaGGCCGCCUGUu---GCGUCUUGa -3'
miRNA:   3'- gGgaCCGGCGGACGuucgUGUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 190989 0.7 0.803418
Target:  5'- aCCUggacGGCCGUCUGCAcGGCGCA-CUg- -3'
miRNA:   3'- -GGGa---CCGGCGGACGU-UCGUGUaGAac -5'
13957 3' -56.2 NC_003521.1 + 52344 0.7 0.803418
Target:  5'- aCCCaGGCCcacgGCCUGCucguagcucggAGGCGCGUCa-- -3'
miRNA:   3'- -GGGaCCGG----CGGACG-----------UUCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 142406 0.7 0.803418
Target:  5'- gCCCUGGCCGCCcu--GGCcaACGUCa-- -3'
miRNA:   3'- -GGGACCGGCGGacguUCG--UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 53710 0.69 0.820507
Target:  5'- gCCCUGGCCGCC---GAGCugGUg--- -3'
miRNA:   3'- -GGGACCGGCGGacgUUCGugUAgaac -5'
13957 3' -56.2 NC_003521.1 + 122213 0.69 0.860244
Target:  5'- cUCCauGCUGCCUGCGAGCGCGgg-UGc -3'
miRNA:   3'- -GGGacCGGCGGACGUUCGUGUagaAC- -5'
13957 3' -56.2 NC_003521.1 + 102704 0.68 0.867625
Target:  5'- aUCUGccGCgGCCUGCG-GCGCGUCUg- -3'
miRNA:   3'- gGGAC--CGgCGGACGUuCGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 27691 0.68 0.867625
Target:  5'- gCCUGGgCUGCCUGgAGGCcuacgugcGCAUCa-- -3'
miRNA:   3'- gGGACC-GGCGGACgUUCG--------UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 156217 0.68 0.874804
Target:  5'- aCCUGGCCGUCaccgacGcCGAGCugGUCg-- -3'
miRNA:   3'- gGGACCGGCGGa-----C-GUUCGugUAGaac -5'
13957 3' -56.2 NC_003521.1 + 60590 0.68 0.874804
Target:  5'- -gUUGGCCGgCUGCAucAGCGcCGUCUg- -3'
miRNA:   3'- ggGACCGGCgGACGU--UCGU-GUAGAac -5'
13957 3' -56.2 NC_003521.1 + 163962 0.68 0.874804
Target:  5'- gCCUcgUGGCCGCC-GUuGGCGCcgcUCUUGg -3'
miRNA:   3'- -GGG--ACCGGCGGaCGuUCGUGu--AGAAC- -5'
13957 3' -56.2 NC_003521.1 + 214473 0.68 0.881088
Target:  5'- aUCCUGGCCGUCcucuuucaggacgUGCG-GCACGUUg-- -3'
miRNA:   3'- -GGGACCGGCGG-------------ACGUuCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 125631 0.68 0.881776
Target:  5'- uCCUUGGcCCGCa-GCAGGUACucgucgaugGUCUUGa -3'
miRNA:   3'- -GGGACC-GGCGgaCGUUCGUG---------UAGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.