miRNA display CGI


Results 1 - 20 of 106 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 3' -56.2 NC_003521.1 + 26198 1.11 0.002872
Target:  5'- aCCCUGGCCGCCUGCAAGCACAUCUUGg -3'
miRNA:   3'- -GGGACCGGCGGACGUUCGUGUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 53710 0.69 0.820507
Target:  5'- gCCCUGGCCGCC---GAGCugGUg--- -3'
miRNA:   3'- -GGGACCGGCGGacgUUCGugUAgaac -5'
13957 3' -56.2 NC_003521.1 + 27691 0.68 0.867625
Target:  5'- gCCUGGgCUGCCUGgAGGCcuacgugcGCAUCa-- -3'
miRNA:   3'- gGGACC-GGCGGACgUUCG--------UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 76608 0.66 0.956053
Target:  5'- aCCUGGugcgcaagaCgGCCUGCGAGUuCGUCa-- -3'
miRNA:   3'- gGGACC---------GgCGGACGUUCGuGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 88032 0.74 0.601003
Target:  5'- aCCUGGCCcugGCCUGCGccaccuguccgcAGCugGUCUc- -3'
miRNA:   3'- gGGACCGG---CGGACGU------------UCGugUAGAac -5'
13957 3' -56.2 NC_003521.1 + 32485 0.72 0.700613
Target:  5'- aCCUGGCCGUCugggccgcguUGCGAGC-CAUCc-- -3'
miRNA:   3'- gGGACCGGCGG----------ACGUUCGuGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 113046 0.72 0.710406
Target:  5'- gCCCguaGGCgGCCaGCAGGCACAUg--- -3'
miRNA:   3'- -GGGa--CCGgCGGaCGUUCGUGUAgaac -5'
13957 3' -56.2 NC_003521.1 + 25823 0.72 0.710406
Target:  5'- cCCCgcGGCCGCCUGCAcaacAGCGuccgcCGUCg-- -3'
miRNA:   3'- -GGGa-CCGGCGGACGU----UCGU-----GUAGaac -5'
13957 3' -56.2 NC_003521.1 + 224999 0.71 0.748854
Target:  5'- gCgCUGGCCGCCUGCGucggcgAGCACc----- -3'
miRNA:   3'- -GgGACCGGCGGACGU------UCGUGuagaac -5'
13957 3' -56.2 NC_003521.1 + 70076 0.7 0.803418
Target:  5'- gCCUGuGUCGCCucaagUGCGAGCGuCAUCUc- -3'
miRNA:   3'- gGGAC-CGGCGG-----ACGUUCGU-GUAGAac -5'
13957 3' -56.2 NC_003521.1 + 206436 0.71 0.758243
Target:  5'- gCCCUGGCCGcCCUGCuccuGgGCuUCUc- -3'
miRNA:   3'- -GGGACCGGC-GGACGuu--CgUGuAGAac -5'
13957 3' -56.2 NC_003521.1 + 110244 0.71 0.739368
Target:  5'- aCCggcaGGCCGCCcuacUGCAGGCGCAggaCUUc -3'
miRNA:   3'- gGGa---CCGGCGG----ACGUUCGUGUa--GAAc -5'
13957 3' -56.2 NC_003521.1 + 151569 0.77 0.421887
Target:  5'- gCCUGGCCGCCuUGC--GCGCGUCg-- -3'
miRNA:   3'- gGGACCGGCGG-ACGuuCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 181382 0.7 0.767525
Target:  5'- aCUCgGGUCGCCUGguGGCGCAauUCg-- -3'
miRNA:   3'- -GGGaCCGGCGGACguUCGUGU--AGaac -5'
13957 3' -56.2 NC_003521.1 + 16837 0.76 0.457178
Target:  5'- uCCCcGGUCGCCUcGCAGGCGCAgCUUu -3'
miRNA:   3'- -GGGaCCGGCGGA-CGUUCGUGUaGAAc -5'
13957 3' -56.2 NC_003521.1 + 26027 0.71 0.729792
Target:  5'- cCCCUGGgCUGCCUGguGGUgcccggacACAUCgUGa -3'
miRNA:   3'- -GGGACC-GGCGGACguUCG--------UGUAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 223909 0.7 0.776692
Target:  5'- gCgCUGGCaGCUggGCAGGCGCAUCgUGg -3'
miRNA:   3'- -GgGACCGgCGGa-CGUUCGUGUAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 102704 0.68 0.867625
Target:  5'- aUCUGccGCgGCCUGCG-GCGCGUCUg- -3'
miRNA:   3'- gGGAC--CGgCGGACGUuCGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 88128 0.75 0.541798
Target:  5'- gCCUGGCCagcGCCUGCGAGgACAcCUa- -3'
miRNA:   3'- gGGACCGG---CGGACGUUCgUGUaGAac -5'
13957 3' -56.2 NC_003521.1 + 66823 0.72 0.710406
Target:  5'- gCgCUGGCgCGCCagGUcggugAAGCGCGUCUUGa -3'
miRNA:   3'- -GgGACCG-GCGGa-CG-----UUCGUGUAGAAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.