miRNA display CGI


Results 41 - 60 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 52236 0.72 0.834623
Target:  5'- cGGCGGGcuACAguUGgGCAGCG-GCAGGCg -3'
miRNA:   3'- -CCGCCU--UGU--ACaUGUCGCcCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 53313 0.7 0.908001
Target:  5'- aGGCGGAGCAgGUcGCAGUaGGUgaaguaccaguugaaGGGCCa -3'
miRNA:   3'- -CCGCCUUGUaCA-UGUCGcCCG---------------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 53421 0.66 0.980775
Target:  5'- gGGCGGccGCGUGUACuGUuacgcgcccucGGGC-GACUg -3'
miRNA:   3'- -CCGCCu-UGUACAUGuCG-----------CCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 53620 0.66 0.984576
Target:  5'- aGCGGGACG-GUGCuGCacaucGGCuGGCCc -3'
miRNA:   3'- cCGCCUUGUaCAUGuCGc----CCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 54030 0.67 0.976315
Target:  5'- gGGCGGGAaggGUGcCAGCGaGCGGAg- -3'
miRNA:   3'- -CCGCCUUguaCAU-GUCGCcCGUCUgg -5'
13957 5' -54.4 NC_003521.1 + 54314 0.69 0.932999
Target:  5'- cGGCGGAggcgGCgGUGgugGCGGCGGcGgGGGCa -3'
miRNA:   3'- -CCGCCU----UG-UACa--UGUCGCC-CgUCUGg -5'
13957 5' -54.4 NC_003521.1 + 55818 0.7 0.905602
Target:  5'- uGCGcucGAACcaGUcGCAGCGcGGCAGGCCg -3'
miRNA:   3'- cCGC---CUUGuaCA-UGUCGC-CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 56150 0.69 0.916679
Target:  5'- aGCGcaucuucGAgcACAUGUacuucGCGGCGGuGCGGGCCa -3'
miRNA:   3'- cCGC-------CU--UGUACA-----UGUCGCC-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 56729 0.67 0.97382
Target:  5'- gGGCGGGcCGUGgcGCGGCGccucuCGGACCu -3'
miRNA:   3'- -CCGCCUuGUACa-UGUCGCcc---GUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 57043 0.67 0.965198
Target:  5'- gGGCGGc-CAUGUGCaAGUGGaugaGCAG-CCu -3'
miRNA:   3'- -CCGCCuuGUACAUG-UCGCC----CGUCuGG- -5'
13957 5' -54.4 NC_003521.1 + 57695 0.68 0.954373
Target:  5'- cGGCgugcaGGAGCccGUccgcgagACGGUGGGC-GACCg -3'
miRNA:   3'- -CCG-----CCUUGuaCA-------UGUCGCCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 61982 0.66 0.982178
Target:  5'- cGGUGGAcCAaGcGCAGCGGGaCAucuucucgucgaucGACCc -3'
miRNA:   3'- -CCGCCUuGUaCaUGUCGCCC-GU--------------CUGG- -5'
13957 5' -54.4 NC_003521.1 + 62287 0.75 0.66859
Target:  5'- gGGCGaGGCAUGccCGGCGGGCGGGUCg -3'
miRNA:   3'- -CCGCcUUGUACauGUCGCCCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 62829 0.67 0.964238
Target:  5'- cGGCGGcguugcugcauugcGACGUGcGguGCGGGUcgaAGACg -3'
miRNA:   3'- -CCGCC--------------UUGUACaUguCGCCCG---UCUGg -5'
13957 5' -54.4 NC_003521.1 + 63095 0.75 0.638716
Target:  5'- gGGCGGuGCggGUAgGGCGGGUAGgacggaggcgGCCa -3'
miRNA:   3'- -CCGCCuUGuaCAUgUCGCCCGUC----------UGG- -5'
13957 5' -54.4 NC_003521.1 + 63191 0.69 0.92272
Target:  5'- uGGCGGAACGagcgGgGCgAGCGGGaGGGCg -3'
miRNA:   3'- -CCGCCUUGUa---CaUG-UCGCCCgUCUGg -5'
13957 5' -54.4 NC_003521.1 + 64820 0.66 0.984576
Target:  5'- cGCaGGAugGUGUugAGCaGcaGCAGACg -3'
miRNA:   3'- cCG-CCUugUACAugUCGcC--CGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 68753 0.71 0.842607
Target:  5'- cGGCGGAcGgGUGagggGCGGCGGGUucuGACg -3'
miRNA:   3'- -CCGCCU-UgUACa---UGUCGCCCGu--CUGg -5'
13957 5' -54.4 NC_003521.1 + 68996 0.68 0.961926
Target:  5'- cGGCGuGAugAaGUcCGuGCGGGCGG-CCg -3'
miRNA:   3'- -CCGC-CUugUaCAuGU-CGCCCGUCuGG- -5'
13957 5' -54.4 NC_003521.1 + 69485 0.69 0.937798
Target:  5'- aGCGGAACccGagcgGCGGCGGG-AGugCc -3'
miRNA:   3'- cCGCCUUGuaCa---UGUCGCCCgUCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.