miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 32157 0.69 0.932507
Target:  5'- cGGCGGAaggcgcccGCGUuguuccaucgaaaGUGCuGCGGGuCGGGCa -3'
miRNA:   3'- -CCGCCU--------UGUA-------------CAUGuCGCCC-GUCUGg -5'
13957 5' -54.4 NC_003521.1 + 32362 0.69 0.937798
Target:  5'- cGGCGGGACGgg-GCuuuuGGUGGcGCGuGGCCa -3'
miRNA:   3'- -CCGCCUUGUacaUG----UCGCC-CGU-CUGG- -5'
13957 5' -54.4 NC_003521.1 + 33148 0.69 0.927973
Target:  5'- cGGCGGcAGCAc---CGGCGGcGCGGGCg -3'
miRNA:   3'- -CCGCC-UUGUacauGUCGCC-CGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 33351 0.68 0.942371
Target:  5'- uGGCuGGAGCccGUGCAGaaGGCcaucuucauGGACCc -3'
miRNA:   3'- -CCG-CCUUGuaCAUGUCgcCCG---------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 33960 0.7 0.893073
Target:  5'- gGGCGGAGucCAgcUGCAGCGuuacguGCGGGCCa -3'
miRNA:   3'- -CCGCCUU--GUacAUGUCGCc-----CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 35197 0.66 0.986248
Target:  5'- cGGacccaGGGACAggggGCGcGCGGGuCGGAUCg -3'
miRNA:   3'- -CCg----CCUUGUaca-UGU-CGCCC-GUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 36785 0.75 0.688378
Target:  5'- uGGCGG-GCGUGgaggACGcGCcuuucGGGCAGGCCg -3'
miRNA:   3'- -CCGCCuUGUACa---UGU-CG-----CCCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 41121 0.66 0.982754
Target:  5'- cGCGGcucaccguGACGuUGUGCAGCaagguguccauGGcGCGGGCCc -3'
miRNA:   3'- cCGCC--------UUGU-ACAUGUCG-----------CC-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 43452 0.67 0.97382
Target:  5'- cGGCccuGGAACucucACAGCGGGCcagcgcggcGGCCg -3'
miRNA:   3'- -CCG---CCUUGuacaUGUCGCCCGu--------CUGG- -5'
13957 5' -54.4 NC_003521.1 + 43503 0.75 0.678502
Target:  5'- aGGCGGAugGagcgcgcccaaUGUGCGGCGucuggugcaGCAGGCCg -3'
miRNA:   3'- -CCGCCUugU-----------ACAUGUCGCc--------CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 44181 0.67 0.976315
Target:  5'- aGGuCGGGACGaaaGUugAGCGcgucguccaccGGCAGcACCg -3'
miRNA:   3'- -CC-GCCUUGUa--CAugUCGC-----------CCGUC-UGG- -5'
13957 5' -54.4 NC_003521.1 + 44685 0.69 0.937798
Target:  5'- gGGCGGcGGCAgGUAgAGCaGGUuguAGGCCg -3'
miRNA:   3'- -CCGCC-UUGUaCAUgUCGcCCG---UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 45029 0.67 0.965198
Target:  5'- gGGCGGAA---GgcCGGCGaGGUGGACUg -3'
miRNA:   3'- -CCGCCUUguaCauGUCGC-CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 45368 0.66 0.978631
Target:  5'- cGGCGccGCAgGUaGCGGCuGGGguGAUCg -3'
miRNA:   3'- -CCGCcuUGUaCA-UGUCG-CCCguCUGG- -5'
13957 5' -54.4 NC_003521.1 + 45898 0.67 0.965198
Target:  5'- cGCGGAGC-----CGGCGGcGguGGCCg -3'
miRNA:   3'- cCGCCUUGuacauGUCGCC-CguCUGG- -5'
13957 5' -54.4 NC_003521.1 + 46443 0.67 0.976315
Target:  5'- cGGCGGGGC---UGCGG-GGGCuggucGGCCu -3'
miRNA:   3'- -CCGCCUUGuacAUGUCgCCCGu----CUGG- -5'
13957 5' -54.4 NC_003521.1 + 47561 0.68 0.961926
Target:  5'- aGCGGGGaag--ACGGCGaGCGGGCCa -3'
miRNA:   3'- cCGCCUUguacaUGUCGCcCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 47896 0.7 0.911533
Target:  5'- cGGCGGAGCGUGaagaAGCgagagGGGCAGuaGCa -3'
miRNA:   3'- -CCGCCUUGUACaug-UCG-----CCCGUC--UGg -5'
13957 5' -54.4 NC_003521.1 + 49040 0.7 0.886481
Target:  5'- uGCGGAcgacaGCAUGUugGGaGGuGCGGACa -3'
miRNA:   3'- cCGCCU-----UGUACAugUCgCC-CGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 50564 0.75 0.65865
Target:  5'- uGGCugaGGAGCGagGUGCGGCGgcagcagcGGCGGACCc -3'
miRNA:   3'- -CCG---CCUUGUa-CAUGUCGC--------CCGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.