miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 196726 0.66 0.980775
Target:  5'- cGGCGGcGACgGUGgugGCGGCGGcGCcuGcACCg -3'
miRNA:   3'- -CCGCC-UUG-UACa--UGUCGCC-CGu-C-UGG- -5'
13957 5' -54.4 NC_003521.1 + 217439 0.66 0.986248
Target:  5'- --aGGAACAcgGUGCucuccagguGCGGGaAGGCCa -3'
miRNA:   3'- ccgCCUUGUa-CAUGu--------CGCCCgUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 78353 0.66 0.982754
Target:  5'- uGGUGGucGACAUGUACcccGUGuGCAuGGCCa -3'
miRNA:   3'- -CCGCC--UUGUACAUGu--CGCcCGU-CUGG- -5'
13957 5' -54.4 NC_003521.1 + 105694 0.66 0.986087
Target:  5'- gGGUGGcugcccaccAGCAgGUaggcgaaGCGGCGGGUggugaAGACCa -3'
miRNA:   3'- -CCGCC---------UUGUaCA-------UGUCGCCCG-----UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 81900 0.66 0.983502
Target:  5'- cGGUGGAgguggcgaagaagugAUAgggGUACuuggAGCGGGCGGuggucACCg -3'
miRNA:   3'- -CCGCCU---------------UGUa--CAUG----UCGCCCGUC-----UGG- -5'
13957 5' -54.4 NC_003521.1 + 80365 0.66 0.984576
Target:  5'- aGCGGcuGCAUGUACAugcgacguuggcGCGuGUAGAUCa -3'
miRNA:   3'- cCGCCu-UGUACAUGU------------CGCcCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 444 0.66 0.982754
Target:  5'- cGGUcGGACGUGUuucgggcCGGCGGGUcgucgcggGGACUg -3'
miRNA:   3'- -CCGcCUUGUACAu------GUCGCCCG--------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 166867 0.66 0.986248
Target:  5'- cGGCGGGcGCAggucGUACAucaaguccGCGGGCGcGCg -3'
miRNA:   3'- -CCGCCU-UGUa---CAUGU--------CGCCCGUcUGg -5'
13957 5' -54.4 NC_003521.1 + 226687 0.66 0.984576
Target:  5'- aGGCGcAACGUcacGUGcCAGCccuucGGCGGACCc -3'
miRNA:   3'- -CCGCcUUGUA---CAU-GUCGc----CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 53421 0.66 0.980775
Target:  5'- gGGCGGccGCGUGUACuGUuacgcgcccucGGGC-GACUg -3'
miRNA:   3'- -CCGCCu-UGUACAUGuCG-----------CCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 105456 0.66 0.980775
Target:  5'- gGGCGGAuccCAcgauCGGCGGGgGGcCCa -3'
miRNA:   3'- -CCGCCUu--GUacauGUCGCCCgUCuGG- -5'
13957 5' -54.4 NC_003521.1 + 240993 0.66 0.982754
Target:  5'- cGGUcGGACGUGUuucgggcCGGCGGGUcgucgcggGGACUg -3'
miRNA:   3'- -CCGcCUUGUACAu------GUCGCCCG--------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 145903 0.66 0.986248
Target:  5'- cGGCgGGAGCA---GCGGCGGuucGCAaacGGCCu -3'
miRNA:   3'- -CCG-CCUUGUacaUGUCGCC---CGU---CUGG- -5'
13957 5' -54.4 NC_003521.1 + 142840 0.66 0.982754
Target:  5'- --gGGGGCGgccACGGCGGGCAcGGCg -3'
miRNA:   3'- ccgCCUUGUacaUGUCGCCCGU-CUGg -5'
13957 5' -54.4 NC_003521.1 + 113417 0.66 0.982754
Target:  5'- uGGcCGcGAGCAg--GCGGCGGGUccAGAgCg -3'
miRNA:   3'- -CC-GC-CUUGUacaUGUCGCCCG--UCUgG- -5'
13957 5' -54.4 NC_003521.1 + 45368 0.66 0.978631
Target:  5'- cGGCGccGCAgGUaGCGGCuGGGguGAUCg -3'
miRNA:   3'- -CCGCcuUGUaCA-UGUCG-CCCguCUGG- -5'
13957 5' -54.4 NC_003521.1 + 233435 0.66 0.980775
Target:  5'- cGGCGGccGCc---ACGGCGGcGCGGACa -3'
miRNA:   3'- -CCGCCu-UGuacaUGUCGCC-CGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 154730 0.66 0.980775
Target:  5'- cGGCGGuGCcgGUgaccaACAGCGuGCGGAa- -3'
miRNA:   3'- -CCGCCuUGuaCA-----UGUCGCcCGUCUgg -5'
13957 5' -54.4 NC_003521.1 + 41121 0.66 0.982754
Target:  5'- cGCGGcucaccguGACGuUGUGCAGCaagguguccauGGcGCGGGCCc -3'
miRNA:   3'- cCGCC--------UUGU-ACAUGUCG-----------CC-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 192445 0.66 0.986248
Target:  5'- aGGagaGGGGCAUG-GCGGCGGcGcCGGuuuCCa -3'
miRNA:   3'- -CCg--CCUUGUACaUGUCGCC-C-GUCu--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.