miRNA display CGI


Results 1 - 20 of 270 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 92613 0.65 0.98763
Target:  5'- gGGCaGGACGgaggGUuccgggaGCgaGGCGGGCGGAUg -3'
miRNA:   3'- -CCGcCUUGUa---CA-------UG--UCGCCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 113972 0.65 0.98763
Target:  5'- aGUGGAagagcagcGCGUcGUGCaccuccaGGCGGcGCAGAUCg -3'
miRNA:   3'- cCGCCU--------UGUA-CAUG-------UCGCC-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 133360 0.65 0.987332
Target:  5'- cGUGGAgaucagcacgguccGCcgGcACAGCGcGGCGGuCCg -3'
miRNA:   3'- cCGCCU--------------UGuaCaUGUCGC-CCGUCuGG- -5'
13957 5' -54.4 NC_003521.1 + 81900 0.66 0.983502
Target:  5'- cGGUGGAgguggcgaagaagugAUAgggGUACuuggAGCGGGCGGuggucACCg -3'
miRNA:   3'- -CCGCCU---------------UGUa--CAUG----UCGCCCGUC-----UGG- -5'
13957 5' -54.4 NC_003521.1 + 10487 0.66 0.982754
Target:  5'- -aCGGAGCAUGcgcCGGCGGGgAuGGCg -3'
miRNA:   3'- ccGCCUUGUACau-GUCGCCCgU-CUGg -5'
13957 5' -54.4 NC_003521.1 + 98432 0.66 0.978631
Target:  5'- uGGCGGGGCGggcGUACGGUGagacgacGCAGAg- -3'
miRNA:   3'- -CCGCCUUGUa--CAUGUCGCc------CGUCUgg -5'
13957 5' -54.4 NC_003521.1 + 226687 0.66 0.984576
Target:  5'- aGGCGcAACGUcacGUGcCAGCccuucGGCGGACCc -3'
miRNA:   3'- -CCGCcUUGUA---CAU-GUCGc----CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 97500 0.66 0.982754
Target:  5'- cGGUGGcGGC-UGUcucuACcGCGGGC-GACCa -3'
miRNA:   3'- -CCGCC-UUGuACA----UGuCGCCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 145903 0.66 0.986248
Target:  5'- cGGCgGGAGCA---GCGGCGGuucGCAaacGGCCu -3'
miRNA:   3'- -CCG-CCUUGUacaUGUCGCC---CGU---CUGG- -5'
13957 5' -54.4 NC_003521.1 + 61982 0.66 0.982178
Target:  5'- cGGUGGAcCAaGcGCAGCGGGaCAucuucucgucgaucGACCc -3'
miRNA:   3'- -CCGCCUuGUaCaUGUCGCCC-GU--------------CUGG- -5'
13957 5' -54.4 NC_003521.1 + 80365 0.66 0.984576
Target:  5'- aGCGGcuGCAUGUACAugcgacguuggcGCGuGUAGAUCa -3'
miRNA:   3'- cCGCCu-UGUACAUGU------------CGCcCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 176764 0.66 0.980775
Target:  5'- --aGGAugAUgcaauuggcGUACAGCcaGGCGGGCCa -3'
miRNA:   3'- ccgCCUugUA---------CAUGUCGc-CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 118921 0.66 0.978407
Target:  5'- cGGCGccgcGGCGUGgGCGGCGGcGUcccgucaGGGCCa -3'
miRNA:   3'- -CCGCc---UUGUACaUGUCGCC-CG-------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 214920 0.66 0.980775
Target:  5'- uGCGGAGCGUGaggauucuuaaUACcaugAGCaGGCuaaAGACCa -3'
miRNA:   3'- cCGCCUUGUAC-----------AUG----UCGcCCG---UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 105694 0.66 0.986087
Target:  5'- gGGUGGcugcccaccAGCAgGUaggcgaaGCGGCGGGUggugaAGACCa -3'
miRNA:   3'- -CCGCC---------UUGUaCA-------UGUCGCCCG-----UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 119600 0.66 0.978631
Target:  5'- cGGCGGGugcaGCGUcucGUGCuGCaGGUGGACg -3'
miRNA:   3'- -CCGCCU----UGUA---CAUGuCGcCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 200323 0.66 0.982754
Target:  5'- cGGUcGGACGUGUuucgggcCGGCGGGUcgucgcggGGACUg -3'
miRNA:   3'- -CCGcCUUGUACAu------GUCGCCCG--------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 196726 0.66 0.980775
Target:  5'- cGGCGGcGACgGUGgugGCGGCGGcGCcuGcACCg -3'
miRNA:   3'- -CCGCC-UUG-UACa--UGUCGCC-CGu-C-UGG- -5'
13957 5' -54.4 NC_003521.1 + 217503 0.66 0.980775
Target:  5'- aGGUGGccuGCAUGgccACGGUGcuGUAGACCc -3'
miRNA:   3'- -CCGCCu--UGUACa--UGUCGCc-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 5716 0.66 0.984576
Target:  5'- -cCGGggUuauGUGUACGGCccGGGCAcGGCg -3'
miRNA:   3'- ccGCCuuG---UACAUGUCG--CCCGU-CUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.