Results 1 - 20 of 270 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 26159 | 1.15 | 0.003064 |
Target: 5'- uGGCGGAACAUGUACAGCGGGCAGACCa -3' miRNA: 3'- -CCGCCUUGUACAUGUCGCCCGUCUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 118594 | 0.83 | 0.281949 |
Target: 5'- gGGCGGGuucuGCAgggccaacgcgGCGGCGGGCAGGCCg -3' miRNA: 3'- -CCGCCU----UGUaca--------UGUCGCCCGUCUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 92643 | 0.81 | 0.340298 |
Target: 5'- cGGCGGAGCGacgGCAGCGGGCgagcGGACg -3' miRNA: 3'- -CCGCCUUGUacaUGUCGCCCG----UCUGg -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 195369 | 0.81 | 0.3478 |
Target: 5'- uGGCGGGGCGUcUGCGggacGCGGGuCAGGCCg -3' miRNA: 3'- -CCGCCUUGUAcAUGU----CGCCC-GUCUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 134977 | 0.8 | 0.420492 |
Target: 5'- aGGUGG-GCuUGUGCAGCcgguagcagGGGCAGGCCg -3' miRNA: 3'- -CCGCCuUGuACAUGUCG---------CCCGUCUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 153340 | 0.79 | 0.437852 |
Target: 5'- cGgGGAACGUGUucaGCAGCuGGCAGAUCu -3' miRNA: 3'- cCgCCUUGUACA---UGUCGcCCGUCUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 200301 | 0.79 | 0.47376 |
Target: 5'- cGGCGGc----GUGCGGCGGGCcGGCCg -3' miRNA: 3'- -CCGCCuuguaCAUGUCGCCCGuCUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 241015 | 0.79 | 0.47376 |
Target: 5'- cGGCGGc----GUGCGGCGGGCcGGCCg -3' miRNA: 3'- -CCGCCuuguaCAUGUCGCCCGuCUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 466 | 0.79 | 0.47376 |
Target: 5'- cGGCGGc----GUGCGGCGGGCcGGCCg -3' miRNA: 3'- -CCGCCuuguaCAUGUCGCCCGuCUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 127529 | 0.77 | 0.569167 |
Target: 5'- aGUGGAagaGCAUGUGCGGCGGcaGCAcGCCg -3' miRNA: 3'- cCGCCU---UGUACAUGUCGCC--CGUcUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 137247 | 0.76 | 0.588922 |
Target: 5'- cGGcCGGGGCcgacgGcgGCAGCGGGCAGAgCg -3' miRNA: 3'- -CC-GCCUUGua---Ca-UGUCGCCCGUCUgG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 87500 | 0.76 | 0.598848 |
Target: 5'- cGGCGaGGACAcgGUcaacguCAGCGGGCGGAgCg -3' miRNA: 3'- -CCGC-CUUGUa-CAu-----GUCGCCCGUCUgG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 115376 | 0.76 | 0.618763 |
Target: 5'- uGGCcaGGGccgGCAUGUGCAgggcGCGGGCGGccGCCa -3' miRNA: 3'- -CCG--CCU---UGUACAUGU----CGCCCGUC--UGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 63095 | 0.75 | 0.638716 |
Target: 5'- gGGCGGuGCggGUAgGGCGGGUAGgacggaggcgGCCa -3' miRNA: 3'- -CCGCCuUGuaCAUgUCGCCCGUC----------UGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 50564 | 0.75 | 0.65865 |
Target: 5'- uGGCugaGGAGCGagGUGCGGCGgcagcagcGGCGGACCc -3' miRNA: 3'- -CCG---CCUUGUa-CAUGUCGC--------CCGUCUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 130742 | 0.75 | 0.65865 |
Target: 5'- aGuCGGGACGUGU-CGGCGGGCGcGAgCg -3' miRNA: 3'- cC-GCCUUGUACAuGUCGCCCGU-CUgG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 110009 | 0.75 | 0.65865 |
Target: 5'- aGGCGGGAgAUGUGCAcccggcucucGUGGGCGcgcugcgguGACCc -3' miRNA: 3'- -CCGCCUUgUACAUGU----------CGCCCGU---------CUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 62287 | 0.75 | 0.66859 |
Target: 5'- gGGCGaGGCAUGccCGGCGGGCGGGUCg -3' miRNA: 3'- -CCGCcUUGUACauGUCGCCCGUCUGG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 119319 | 0.75 | 0.678502 |
Target: 5'- aGGCGGAugGUGaugcgcacGCGGuCGGGCAGGgguCCg -3' miRNA: 3'- -CCGCCUugUACa-------UGUC-GCCCGUCU---GG- -5' |
|||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 43503 | 0.75 | 0.678502 |
Target: 5'- aGGCGGAugGagcgcgcccaaUGUGCGGCGucuggugcaGCAGGCCg -3' miRNA: 3'- -CCGCCUugU-----------ACAUGUCGCc--------CGUCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home