miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 218704 0.72 0.834623
Target:  5'- aGGCGGAGgAgacgGCGGCGgcGGCGGGCg -3'
miRNA:   3'- -CCGCCUUgUaca-UGUCGC--CCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 91864 0.73 0.783304
Target:  5'- cGGCGGAcCAgg-ACGGCGGcgGCGGugCg -3'
miRNA:   3'- -CCGCCUuGUacaUGUCGCC--CGUCugG- -5'
13957 5' -54.4 NC_003521.1 + 110611 0.73 0.783304
Target:  5'- gGGCGGcuGCAucUGUACcGCGGGCAucGGCa -3'
miRNA:   3'- -CCGCCu-UGU--ACAUGuCGCCCGU--CUGg -5'
13957 5' -54.4 NC_003521.1 + 216852 0.73 0.783304
Target:  5'- cGGCGGAcgacuguuccagGCccGUGgAGCGGGacaucCAGGCCa -3'
miRNA:   3'- -CCGCCU------------UGuaCAUgUCGCCC-----GUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 91950 0.72 0.792226
Target:  5'- cGGCGGAcccCGUG-GCGGCgaGGGCGGAaCCc -3'
miRNA:   3'- -CCGCCUu--GUACaUGUCG--CCCGUCU-GG- -5'
13957 5' -54.4 NC_003521.1 + 101764 0.72 0.809652
Target:  5'- cGGCGGAugGUgGUGCAGCaGGuugcGCAGGUCa -3'
miRNA:   3'- -CCGCCUugUA-CAUGUCG-CC----CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 165873 0.72 0.809652
Target:  5'- aGCGGugcACGUGcucggGCGGCGGGUAcACCa -3'
miRNA:   3'- cCGCCu--UGUACa----UGUCGCCCGUcUGG- -5'
13957 5' -54.4 NC_003521.1 + 238516 0.72 0.821489
Target:  5'- cGGCGcGAGCAgGUGCgagagcucgucggccAGCGGGUAGaggugGCCg -3'
miRNA:   3'- -CCGC-CUUGUaCAUG---------------UCGCCCGUC-----UGG- -5'
13957 5' -54.4 NC_003521.1 + 52236 0.72 0.834623
Target:  5'- cGGCGGGcuACAguUGgGCAGCG-GCAGGCg -3'
miRNA:   3'- -CCGCCU--UGU--ACaUGUCGCcCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 221801 0.74 0.727354
Target:  5'- cGGCGG-GCAUGggcuccguCGGCgGGGCGGGCg -3'
miRNA:   3'- -CCGCCuUGUACau------GUCG-CCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 197472 0.74 0.717706
Target:  5'- uGGCGGAuguuCAcGcGCGGCGGGcCGGACg -3'
miRNA:   3'- -CCGCCUu---GUaCaUGUCGCCC-GUCUGg -5'
13957 5' -54.4 NC_003521.1 + 36785 0.75 0.688378
Target:  5'- uGGCGG-GCGUGgaggACGcGCcuuucGGGCAGGCCg -3'
miRNA:   3'- -CCGCCuUGUACa---UGU-CG-----CCCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 153340 0.79 0.437852
Target:  5'- cGgGGAACGUGUucaGCAGCuGGCAGAUCu -3'
miRNA:   3'- cCgCCUUGUACA---UGUCGcCCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 200301 0.79 0.47376
Target:  5'- cGGCGGc----GUGCGGCGGGCcGGCCg -3'
miRNA:   3'- -CCGCCuuguaCAUGUCGCCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 127529 0.77 0.569167
Target:  5'- aGUGGAagaGCAUGUGCGGCGGcaGCAcGCCg -3'
miRNA:   3'- cCGCCU---UGUACAUGUCGCC--CGUcUGG- -5'
13957 5' -54.4 NC_003521.1 + 137247 0.76 0.588922
Target:  5'- cGGcCGGGGCcgacgGcgGCAGCGGGCAGAgCg -3'
miRNA:   3'- -CC-GCCUUGua---Ca-UGUCGCCCGUCUgG- -5'
13957 5' -54.4 NC_003521.1 + 115376 0.76 0.618763
Target:  5'- uGGCcaGGGccgGCAUGUGCAgggcGCGGGCGGccGCCa -3'
miRNA:   3'- -CCG--CCU---UGUACAUGU----CGCCCGUC--UGG- -5'
13957 5' -54.4 NC_003521.1 + 110009 0.75 0.65865
Target:  5'- aGGCGGGAgAUGUGCAcccggcucucGUGGGCGcgcugcgguGACCc -3'
miRNA:   3'- -CCGCCUUgUACAUGU----------CGCCCGU---------CUGG- -5'
13957 5' -54.4 NC_003521.1 + 130742 0.75 0.65865
Target:  5'- aGuCGGGACGUGU-CGGCGGGCGcGAgCg -3'
miRNA:   3'- cC-GCCUUGUACAuGUCGCCCGU-CUgG- -5'
13957 5' -54.4 NC_003521.1 + 119319 0.75 0.678502
Target:  5'- aGGCGGAugGUGaugcgcacGCGGuCGGGCAGGgguCCg -3'
miRNA:   3'- -CCGCCUugUACa-------UGUC-GCCCGUCU---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.