miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 26159 1.15 0.003064
Target:  5'- uGGCGGAACAUGUACAGCGGGCAGACCa -3'
miRNA:   3'- -CCGCCUUGUACAUGUCGCCCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 124399 0.72 0.801011
Target:  5'- cGGCGGAG-----GCAGCGGcGCGGGCg -3'
miRNA:   3'- -CCGCCUUguacaUGUCGCC-CGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 224084 0.72 0.809652
Target:  5'- aGGCGcccGCGgugGCGGCGGcGCAGGCCc -3'
miRNA:   3'- -CCGCcu-UGUacaUGUCGCC-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 92613 0.65 0.98763
Target:  5'- gGGCaGGACGgaggGUuccgggaGCgaGGCGGGCGGAUg -3'
miRNA:   3'- -CCGcCUUGUa---CA-------UG--UCGCCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 241015 0.79 0.47376
Target:  5'- cGGCGGc----GUGCGGCGGGCcGGCCg -3'
miRNA:   3'- -CCGCCuuguaCAUGUCGCCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 466 0.79 0.47376
Target:  5'- cGGCGGc----GUGCGGCGGGCcGGCCg -3'
miRNA:   3'- -CCGCCuuguaCAUGUCGCCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 63095 0.75 0.638716
Target:  5'- gGGCGGuGCggGUAgGGCGGGUAGgacggaggcgGCCa -3'
miRNA:   3'- -CCGCCuUGuaCAUgUCGCCCGUC----------UGG- -5'
13957 5' -54.4 NC_003521.1 + 50564 0.75 0.65865
Target:  5'- uGGCugaGGAGCGagGUGCGGCGgcagcagcGGCGGACCc -3'
miRNA:   3'- -CCG---CCUUGUa-CAUGUCGC--------CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 142871 0.74 0.727354
Target:  5'- cGGCGGGcagcgGCGUGggaGGCGGGgAGGCg -3'
miRNA:   3'- -CCGCCU-----UGUACaugUCGCCCgUCUGg -5'
13957 5' -54.4 NC_003521.1 + 114797 0.73 0.783304
Target:  5'- aGCGGAAaucgauggugccCGUGgcgGCGGUGGGCAcggcGGCCa -3'
miRNA:   3'- cCGCCUU------------GUACa--UGUCGCCCGU----CUGG- -5'
13957 5' -54.4 NC_003521.1 + 185167 0.73 0.746407
Target:  5'- cGGCGGcAACGgggGUGcCAGCGGGguaugAGGCCu -3'
miRNA:   3'- -CCGCC-UUGUa--CAU-GUCGCCCg----UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 43503 0.75 0.678502
Target:  5'- aGGCGGAugGagcgcgcccaaUGUGCGGCGucuggugcaGCAGGCCg -3'
miRNA:   3'- -CCGCCUugU-----------ACAUGUCGCc--------CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 118594 0.83 0.281949
Target:  5'- gGGCGGGuucuGCAgggccaacgcgGCGGCGGGCAGGCCg -3'
miRNA:   3'- -CCGCCU----UGUaca--------UGUCGCCCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 117446 0.73 0.755796
Target:  5'- gGGCGGcGGCAgcgACGGCGGGuUAGGCUu -3'
miRNA:   3'- -CCGCC-UUGUacaUGUCGCCC-GUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 92643 0.81 0.340298
Target:  5'- cGGCGGAGCGacgGCAGCGGGCgagcGGACg -3'
miRNA:   3'- -CCGCCUUGUacaUGUCGCCCG----UCUGg -5'
13957 5' -54.4 NC_003521.1 + 62287 0.75 0.66859
Target:  5'- gGGCGaGGCAUGccCGGCGGGCGGGUCg -3'
miRNA:   3'- -CCGCcUUGUACauGUCGCCCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 194695 0.73 0.783304
Target:  5'- cGCGGggUgcGUGgGGCGcGCGGGCCa -3'
miRNA:   3'- cCGCCuuGuaCAUgUCGCcCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 127205 0.72 0.809652
Target:  5'- cGGCGGcACAgcgACAGCaGGUAGGCg -3'
miRNA:   3'- -CCGCCuUGUacaUGUCGcCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 195369 0.81 0.3478
Target:  5'- uGGCGGGGCGUcUGCGggacGCGGGuCAGGCCg -3'
miRNA:   3'- -CCGCCUUGUAcAUGU----CGCCC-GUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 87500 0.76 0.598848
Target:  5'- cGGCGaGGACAcgGUcaacguCAGCGGGCGGAgCg -3'
miRNA:   3'- -CCGC-CUUGUa-CAu-----GUCGCCCGUCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.