miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 444 0.66 0.982754
Target:  5'- cGGUcGGACGUGUuucgggcCGGCGGGUcgucgcggGGACUg -3'
miRNA:   3'- -CCGcCUUGUACAu------GUCGCCCG--------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 466 0.79 0.47376
Target:  5'- cGGCGGc----GUGCGGCGGGCcGGCCg -3'
miRNA:   3'- -CCGCCuuguaCAUGUCGCCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 1042 0.69 0.932999
Target:  5'- aGGCGGAcacggacaacgcguACAgcucgaccgaccauCGGCGGGCgAGGCCg -3'
miRNA:   3'- -CCGCCU--------------UGUacau----------GUCGCCCG-UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 4127 0.67 0.968267
Target:  5'- gGGUGGGAUAcg-GgAGCGGGCcGGCg -3'
miRNA:   3'- -CCGCCUUGUacaUgUCGCCCGuCUGg -5'
13957 5' -54.4 NC_003521.1 + 4646 0.68 0.961926
Target:  5'- aGCGGGugaGUGaGCgAGCGGgacGCGGGCCg -3'
miRNA:   3'- cCGCCUug-UACaUG-UCGCC---CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 5716 0.66 0.984576
Target:  5'- -cCGGggUuauGUGUACGGCccGGGCAcGGCg -3'
miRNA:   3'- ccGCCuuG---UACAUGUCG--CCCGU-CUGg -5'
13957 5' -54.4 NC_003521.1 + 10487 0.66 0.982754
Target:  5'- -aCGGAGCAUGcgcCGGCGGGgAuGGCg -3'
miRNA:   3'- ccGCCUUGUACau-GUCGCCCgU-CUGg -5'
13957 5' -54.4 NC_003521.1 + 14238 0.71 0.858022
Target:  5'- uGGCGGAACAggcgucgGUACGGgcaaguauaCGuGGUAGACa -3'
miRNA:   3'- -CCGCCUUGUa------CAUGUC---------GC-CCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 18735 0.67 0.968267
Target:  5'- cGGCGGcgauCGUGgcgGCGGUGGcGCcGACg -3'
miRNA:   3'- -CCGCCuu--GUACa--UGUCGCC-CGuCUGg -5'
13957 5' -54.4 NC_003521.1 + 19859 0.66 0.978631
Target:  5'- -uUGGAACAccaGUagcACAGCaGGUGGACCg -3'
miRNA:   3'- ccGCCUUGUa--CA---UGUCGcCCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 24231 0.7 0.899448
Target:  5'- aGCGGGu--UGgGCAGCGGGCGGuCg -3'
miRNA:   3'- cCGCCUuguACaUGUCGCCCGUCuGg -5'
13957 5' -54.4 NC_003521.1 + 24411 0.67 0.971139
Target:  5'- cGCGGAGCAUagaaagccagACGGCGcaggggccGGCGGGCUc -3'
miRNA:   3'- cCGCCUUGUAca--------UGUCGC--------CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 25552 0.67 0.971139
Target:  5'- cGGCGGAcGCuguUGUGCAGgCGGccGCGGGg- -3'
miRNA:   3'- -CCGCCU-UGu--ACAUGUC-GCC--CGUCUgg -5'
13957 5' -54.4 NC_003521.1 + 26079 0.68 0.961926
Target:  5'- -cUGGAGCGaacUGUACGGCuGGCAG-CUg -3'
miRNA:   3'- ccGCCUUGU---ACAUGUCGcCCGUCuGG- -5'
13957 5' -54.4 NC_003521.1 + 26159 1.15 0.003064
Target:  5'- uGGCGGAACAUGUACAGCGGGCAGACCa -3'
miRNA:   3'- -CCGCCUUGUACAUGUCGCCCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 29577 0.67 0.968267
Target:  5'- cGGUGGAGCAcgUGUguauucccaACAGCcuGCuGACCa -3'
miRNA:   3'- -CCGCCUUGU--ACA---------UGUCGccCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 31098 0.68 0.961926
Target:  5'- cGGCGGcGGCcgGUACAcGCGGcGCA-ACUu -3'
miRNA:   3'- -CCGCC-UUGuaCAUGU-CGCC-CGUcUGG- -5'
13957 5' -54.4 NC_003521.1 + 31435 0.71 0.858022
Target:  5'- aGGCGGAugAUGcGCAGCGccaGCAcGGCg -3'
miRNA:   3'- -CCGCCUugUACaUGUCGCc--CGU-CUGg -5'
13957 5' -54.4 NC_003521.1 + 31707 0.7 0.879676
Target:  5'- cGGCGGcAGCAUGUGCGcguGCuGGGaCGccgcGGCCa -3'
miRNA:   3'- -CCGCC-UUGUACAUGU---CG-CCC-GU----CUGG- -5'
13957 5' -54.4 NC_003521.1 + 31865 0.68 0.961926
Target:  5'- cGGCGGcGCG-GUGCgAGCGGuaccgcaccGCcAGGCCg -3'
miRNA:   3'- -CCGCCuUGUaCAUG-UCGCC---------CG-UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.