miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 241015 0.79 0.47376
Target:  5'- cGGCGGc----GUGCGGCGGGCcGGCCg -3'
miRNA:   3'- -CCGCCuuguaCAUGUCGCCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 240993 0.66 0.982754
Target:  5'- cGGUcGGACGUGUuucgggcCGGCGGGUcgucgcggGGACUg -3'
miRNA:   3'- -CCGcCUUGUACAu------GUCGCCCG--------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 238516 0.72 0.821489
Target:  5'- cGGCGcGAGCAgGUGCgagagcucgucggccAGCGGGUAGaggugGCCg -3'
miRNA:   3'- -CCGC-CUUGUaCAUG---------------UCGCCCGUC-----UGG- -5'
13957 5' -54.4 NC_003521.1 + 238452 0.7 0.905602
Target:  5'- aGGCGcaGGGCGgccuCGGCGGGCGGGgCg -3'
miRNA:   3'- -CCGC--CUUGUacauGUCGCCCGUCUgG- -5'
13957 5' -54.4 NC_003521.1 + 237683 0.67 0.97382
Target:  5'- aGUGGuauCGUaGUACGGUaccgGGGCAGGCa -3'
miRNA:   3'- cCGCCuu-GUA-CAUGUCG----CCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 236970 0.67 0.968267
Target:  5'- cGuCGGcAACAgGUACGGCGucGGCAGAgCu -3'
miRNA:   3'- cC-GCC-UUGUaCAUGUCGC--CCGUCUgG- -5'
13957 5' -54.4 NC_003521.1 + 235582 0.7 0.908001
Target:  5'- cGCGGGACGUGcgggaggacgagagGCGGacuCGGGCGGAgCCc -3'
miRNA:   3'- cCGCCUUGUACa-------------UGUC---GCCCGUCU-GG- -5'
13957 5' -54.4 NC_003521.1 + 234166 0.71 0.873371
Target:  5'- aGCGGGACAUGUucuggcaacgucGCaAGCGGGCcaagcguucgcgcgcGGCCu -3'
miRNA:   3'- cCGCCUUGUACA------------UG-UCGCCCGu--------------CUGG- -5'
13957 5' -54.4 NC_003521.1 + 233435 0.66 0.980775
Target:  5'- cGGCGGccGCc---ACGGCGGcGCGGACa -3'
miRNA:   3'- -CCGCCu-UGuacaUGUCGCC-CGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 233348 0.69 0.937798
Target:  5'- cGGCGcGAGCGgcggagGCGGCGGcagucccaGCAGACg -3'
miRNA:   3'- -CCGC-CUUGUaca---UGUCGCC--------CGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 233095 0.7 0.911533
Target:  5'- cGGCGGGGgAgGUACcG-GGGCAGcGCCg -3'
miRNA:   3'- -CCGCCUUgUaCAUGuCgCCCGUC-UGG- -5'
13957 5' -54.4 NC_003521.1 + 228234 0.68 0.961926
Target:  5'- uGCGcGAGCAgacGCAGCGGuaCGGGCCu -3'
miRNA:   3'- cCGC-CUUGUacaUGUCGCCc-GUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 227717 0.69 0.937798
Target:  5'- cGGcCGGA--AUGUGCGGUuuuuaaaauccGGGCGGGCg -3'
miRNA:   3'- -CC-GCCUugUACAUGUCG-----------CCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 227122 0.67 0.968563
Target:  5'- cGCuGGAGCccugAUGggccugcccggcgcgGCGGCGGGCgaGGACCc -3'
miRNA:   3'- cCG-CCUUG----UACa--------------UGUCGCCCG--UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 226687 0.66 0.984576
Target:  5'- aGGCGcAACGUcacGUGcCAGCccuucGGCGGACCc -3'
miRNA:   3'- -CCGCcUUGUA---CAU-GUCGc----CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 226325 0.68 0.948397
Target:  5'- --aGGAACAagaUGUGCAuggugcgcgcgccccGCGGGUAGcGCCg -3'
miRNA:   3'- ccgCCUUGU---ACAUGU---------------CGCCCGUC-UGG- -5'
13957 5' -54.4 NC_003521.1 + 224520 0.66 0.986248
Target:  5'- gGGCGcGcGCcugcauuucaccAUGUucgACAGCGGuGUGGACCg -3'
miRNA:   3'- -CCGC-CuUG------------UACA---UGUCGCC-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 224084 0.72 0.809652
Target:  5'- aGGCGcccGCGgugGCGGCGGcGCAGGCCc -3'
miRNA:   3'- -CCGCcu-UGUacaUGUCGCC-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 223951 0.67 0.97382
Target:  5'- cGUGGAcgaGUGguuccaGCAGCGGcGCgAGGCCg -3'
miRNA:   3'- cCGCCUug-UACa-----UGUCGCC-CG-UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 223916 0.71 0.850408
Target:  5'- aGGCGcAGCGcugGCAGCuGGGCAGGCg -3'
miRNA:   3'- -CCGCcUUGUacaUGUCG-CCCGUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.