Results 21 - 40 of 270 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13957 | 5' | -54.4 | NC_003521.1 | + | 36785 | 0.75 | 0.688378 |
Target: 5'- uGGCGG-GCGUGgaggACGcGCcuuucGGGCAGGCCg -3' miRNA: 3'- -CCGCCuUGUACa---UGU-CG-----CCCGUCUGG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 197472 | 0.74 | 0.717706 |
Target: 5'- uGGCGGAuguuCAcGcGCGGCGGGcCGGACg -3' miRNA: 3'- -CCGCCUu---GUaCaUGUCGCCC-GUCUGg -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 221801 | 0.74 | 0.727354 |
Target: 5'- cGGCGG-GCAUGggcuccguCGGCgGGGCGGGCg -3' miRNA: 3'- -CCGCCuUGUACau------GUCG-CCCGUCUGg -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 142871 | 0.74 | 0.727354 |
Target: 5'- cGGCGGGcagcgGCGUGggaGGCGGGgAGGCg -3' miRNA: 3'- -CCGCCU-----UGUACaugUCGCCCgUCUGg -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 185167 | 0.73 | 0.746407 |
Target: 5'- cGGCGGcAACGgggGUGcCAGCGGGguaugAGGCCu -3' miRNA: 3'- -CCGCC-UUGUa--CAU-GUCGCCCg----UCUGG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 155977 | 0.73 | 0.746407 |
Target: 5'- cGGCGGcGGCA---GCGGCGGGCGGcacguaGCCu -3' miRNA: 3'- -CCGCC-UUGUacaUGUCGCCCGUC------UGG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 117446 | 0.73 | 0.755796 |
Target: 5'- gGGCGGcGGCAgcgACGGCGGGuUAGGCUu -3' miRNA: 3'- -CCGCC-UUGUacaUGUCGCCC-GUCUGG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 110611 | 0.73 | 0.783304 |
Target: 5'- gGGCGGcuGCAucUGUACcGCGGGCAucGGCa -3' miRNA: 3'- -CCGCCu-UGU--ACAUGuCGCCCGU--CUGg -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 216852 | 0.73 | 0.783304 |
Target: 5'- cGGCGGAcgacuguuccagGCccGUGgAGCGGGacaucCAGGCCa -3' miRNA: 3'- -CCGCCU------------UGuaCAUgUCGCCC-----GUCUGG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 91864 | 0.73 | 0.783304 |
Target: 5'- cGGCGGAcCAgg-ACGGCGGcgGCGGugCg -3' miRNA: 3'- -CCGCCUuGUacaUGUCGCC--CGUCugG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 114797 | 0.73 | 0.783304 |
Target: 5'- aGCGGAAaucgauggugccCGUGgcgGCGGUGGGCAcggcGGCCa -3' miRNA: 3'- cCGCCUU------------GUACa--UGUCGCCCGU----CUGG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 194695 | 0.73 | 0.783304 |
Target: 5'- cGCGGggUgcGUGgGGCGcGCGGGCCa -3' miRNA: 3'- cCGCCuuGuaCAUgUCGCcCGUCUGG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 91950 | 0.72 | 0.792226 |
Target: 5'- cGGCGGAcccCGUG-GCGGCgaGGGCGGAaCCc -3' miRNA: 3'- -CCGCCUu--GUACaUGUCG--CCCGUCU-GG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 124399 | 0.72 | 0.801011 |
Target: 5'- cGGCGGAG-----GCAGCGGcGCGGGCg -3' miRNA: 3'- -CCGCCUUguacaUGUCGCC-CGUCUGg -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 224084 | 0.72 | 0.809652 |
Target: 5'- aGGCGcccGCGgugGCGGCGGcGCAGGCCc -3' miRNA: 3'- -CCGCcu-UGUacaUGUCGCC-CGUCUGG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 127205 | 0.72 | 0.809652 |
Target: 5'- cGGCGGcACAgcgACAGCaGGUAGGCg -3' miRNA: 3'- -CCGCCuUGUacaUGUCGcCCGUCUGg -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 165873 | 0.72 | 0.809652 |
Target: 5'- aGCGGugcACGUGcucggGCGGCGGGUAcACCa -3' miRNA: 3'- cCGCCu--UGUACa----UGUCGCCCGUcUGG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 101764 | 0.72 | 0.809652 |
Target: 5'- cGGCGGAugGUgGUGCAGCaGGuugcGCAGGUCa -3' miRNA: 3'- -CCGCCUugUA-CAUGUCG-CC----CGUCUGG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 238516 | 0.72 | 0.821489 |
Target: 5'- cGGCGcGAGCAgGUGCgagagcucgucggccAGCGGGUAGaggugGCCg -3' miRNA: 3'- -CCGC-CUUGUaCAUG---------------UCGCCCGUC-----UGG- -5' |
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13957 | 5' | -54.4 | NC_003521.1 | + | 85630 | 0.72 | 0.829749 |
Target: 5'- aGGCGGAggagaaggaggGgGUGagagagacgccggccUGCGGCGGGCcgcGGGCCa -3' miRNA: 3'- -CCGCCU-----------UgUAC---------------AUGUCGCCCG---UCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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