miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 130042 0.66 0.984576
Target:  5'- cGGCGc-GCAcGUGC-GCGGGaCAGGCg -3'
miRNA:   3'- -CCGCcuUGUaCAUGuCGCCC-GUCUGg -5'
13957 5' -54.4 NC_003521.1 + 64820 0.66 0.984576
Target:  5'- cGCaGGAugGUGUugAGCaGcaGCAGACg -3'
miRNA:   3'- cCG-CCUugUACAugUCGcC--CGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 73899 0.66 0.984576
Target:  5'- cGGCGGAgGCcuucUGcUugGGCuGGCAGGCg -3'
miRNA:   3'- -CCGCCU-UGu---AC-AugUCGcCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 117671 0.66 0.984576
Target:  5'- cGCGGGcacgGCAccgACGGCGGGauaGGACg -3'
miRNA:   3'- cCGCCU----UGUacaUGUCGCCCg--UCUGg -5'
13957 5' -54.4 NC_003521.1 + 103850 0.66 0.984576
Target:  5'- cGUGGAggaguACGUGcGCAgcuucugcGCGGGC-GACCu -3'
miRNA:   3'- cCGCCU-----UGUACaUGU--------CGCCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 80365 0.66 0.984576
Target:  5'- aGCGGcuGCAUGUACAugcgacguuggcGCGuGUAGAUCa -3'
miRNA:   3'- cCGCCu-UGUACAUGU------------CGCcCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 5716 0.66 0.984576
Target:  5'- -cCGGggUuauGUGUACGGCccGGGCAcGGCg -3'
miRNA:   3'- ccGCCuuG---UACAUGUCG--CCCGU-CUGg -5'
13957 5' -54.4 NC_003521.1 + 226687 0.66 0.984576
Target:  5'- aGGCGcAACGUcacGUGcCAGCccuucGGCGGACCc -3'
miRNA:   3'- -CCGCcUUGUA---CAU-GUCGc----CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 53620 0.66 0.984576
Target:  5'- aGCGGGACG-GUGCuGCacaucGGCuGGCCc -3'
miRNA:   3'- cCGCCUUGUaCAUGuCGc----CCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 208700 0.66 0.983502
Target:  5'- cGGCGGuAACAUGacCGGCaucuggcaucucgaaGGGCAGuuuuACCc -3'
miRNA:   3'- -CCGCC-UUGUACauGUCG---------------CCCGUC----UGG- -5'
13957 5' -54.4 NC_003521.1 + 81900 0.66 0.983502
Target:  5'- cGGUGGAgguggcgaagaagugAUAgggGUACuuggAGCGGGCGGuggucACCg -3'
miRNA:   3'- -CCGCCU---------------UGUa--CAUG----UCGCCCGUC-----UGG- -5'
13957 5' -54.4 NC_003521.1 + 200323 0.66 0.982754
Target:  5'- cGGUcGGACGUGUuucgggcCGGCGGGUcgucgcggGGACUg -3'
miRNA:   3'- -CCGcCUUGUACAu------GUCGCCCG--------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 10487 0.66 0.982754
Target:  5'- -aCGGAGCAUGcgcCGGCGGGgAuGGCg -3'
miRNA:   3'- ccGCCUUGUACau-GUCGCCCgU-CUGg -5'
13957 5' -54.4 NC_003521.1 + 78353 0.66 0.982754
Target:  5'- uGGUGGucGACAUGUACcccGUGuGCAuGGCCa -3'
miRNA:   3'- -CCGCC--UUGUACAUGu--CGCcCGU-CUGG- -5'
13957 5' -54.4 NC_003521.1 + 113417 0.66 0.982754
Target:  5'- uGGcCGcGAGCAg--GCGGCGGGUccAGAgCg -3'
miRNA:   3'- -CC-GC-CUUGUacaUGUCGCCCG--UCUgG- -5'
13957 5' -54.4 NC_003521.1 + 142840 0.66 0.982754
Target:  5'- --gGGGGCGgccACGGCGGGCAcGGCg -3'
miRNA:   3'- ccgCCUUGUacaUGUCGCCCGU-CUGg -5'
13957 5' -54.4 NC_003521.1 + 212749 0.66 0.982754
Target:  5'- cGuCGGc-CAUGUGCGuGUGGGCcacGGGCCu -3'
miRNA:   3'- cC-GCCuuGUACAUGU-CGCCCG---UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 444 0.66 0.982754
Target:  5'- cGGUcGGACGUGUuucgggcCGGCGGGUcgucgcggGGACUg -3'
miRNA:   3'- -CCGcCUUGUACAu------GUCGCCCG--------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 240993 0.66 0.982754
Target:  5'- cGGUcGGACGUGUuucgggcCGGCGGGUcgucgcggGGACUg -3'
miRNA:   3'- -CCGcCUUGUACAu------GUCGCCCG--------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 41121 0.66 0.982754
Target:  5'- cGCGGcucaccguGACGuUGUGCAGCaagguguccauGGcGCGGGCCc -3'
miRNA:   3'- cCGCC--------UUGU-ACAUGUCG-----------CC-CGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.