miRNA display CGI


Results 41 - 60 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 97500 0.66 0.982754
Target:  5'- cGGUGGcGGC-UGUcucuACcGCGGGC-GACCa -3'
miRNA:   3'- -CCGCC-UUGuACA----UGuCGCCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 61982 0.66 0.982178
Target:  5'- cGGUGGAcCAaGcGCAGCGGGaCAucuucucgucgaucGACCc -3'
miRNA:   3'- -CCGCCUuGUaCaUGUCGCCC-GU--------------CUGG- -5'
13957 5' -54.4 NC_003521.1 + 217503 0.66 0.980775
Target:  5'- aGGUGGccuGCAUGgccACGGUGcuGUAGACCc -3'
miRNA:   3'- -CCGCCu--UGUACa--UGUCGCc-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 214920 0.66 0.980775
Target:  5'- uGCGGAGCGUGaggauucuuaaUACcaugAGCaGGCuaaAGACCa -3'
miRNA:   3'- cCGCCUUGUAC-----------AUG----UCGcCCG---UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 72853 0.66 0.980775
Target:  5'- gGGCGGcGACGguagGcACGGCGGucgucgucaccGCAGGCUc -3'
miRNA:   3'- -CCGCC-UUGUa---CaUGUCGCC-----------CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 176764 0.66 0.980775
Target:  5'- --aGGAugAUgcaauuggcGUACAGCcaGGCGGGCCa -3'
miRNA:   3'- ccgCCUugUA---------CAUGUCGc-CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 196726 0.66 0.980775
Target:  5'- cGGCGGcGACgGUGgugGCGGCGGcGCcuGcACCg -3'
miRNA:   3'- -CCGCC-UUG-UACa--UGUCGCC-CGu-C-UGG- -5'
13957 5' -54.4 NC_003521.1 + 233435 0.66 0.980775
Target:  5'- cGGCGGccGCc---ACGGCGGcGCGGACa -3'
miRNA:   3'- -CCGCCu-UGuacaUGUCGCC-CGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 105456 0.66 0.980775
Target:  5'- gGGCGGAuccCAcgauCGGCGGGgGGcCCa -3'
miRNA:   3'- -CCGCCUu--GUacauGUCGCCCgUCuGG- -5'
13957 5' -54.4 NC_003521.1 + 154730 0.66 0.980775
Target:  5'- cGGCGGuGCcgGUgaccaACAGCGuGCGGAa- -3'
miRNA:   3'- -CCGCCuUGuaCA-----UGUCGCcCGUCUgg -5'
13957 5' -54.4 NC_003521.1 + 53421 0.66 0.980775
Target:  5'- gGGCGGccGCGUGUACuGUuacgcgcccucGGGC-GACUg -3'
miRNA:   3'- -CCGCCu-UGUACAUGuCG-----------CCCGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 119600 0.66 0.978631
Target:  5'- cGGCGGGugcaGCGUcucGUGCuGCaGGUGGACg -3'
miRNA:   3'- -CCGCCU----UGUA---CAUGuCGcCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 98432 0.66 0.978631
Target:  5'- uGGCGGGGCGggcGUACGGUGagacgacGCAGAg- -3'
miRNA:   3'- -CCGCCUUGUa--CAUGUCGCc------CGUCUgg -5'
13957 5' -54.4 NC_003521.1 + 70304 0.66 0.978631
Target:  5'- aGCGGuGCAgGUcgcccaGCAGCGaGGCGGugacGCCg -3'
miRNA:   3'- cCGCCuUGUaCA------UGUCGC-CCGUC----UGG- -5'
13957 5' -54.4 NC_003521.1 + 45368 0.66 0.978631
Target:  5'- cGGCGccGCAgGUaGCGGCuGGGguGAUCg -3'
miRNA:   3'- -CCGCcuUGUaCA-UGUCG-CCCguCUGG- -5'
13957 5' -54.4 NC_003521.1 + 19859 0.66 0.978631
Target:  5'- -uUGGAACAccaGUagcACAGCaGGUGGACCg -3'
miRNA:   3'- ccGCCUUGUa--CA---UGUCGcCCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 118921 0.66 0.978407
Target:  5'- cGGCGccgcGGCGUGgGCGGCGGcGUcccgucaGGGCCa -3'
miRNA:   3'- -CCGCc---UUGUACaUGUCGCC-CG-------UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 147826 0.66 0.978182
Target:  5'- uGCGGAACugcacggugccGUGCAGCcgggGGuGCAGGCg -3'
miRNA:   3'- cCGCCUUGua---------CAUGUCG----CC-CGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 137088 0.66 0.977955
Target:  5'- cGGCGuaguACAUGcGCacgccggggucgucGGCGGGCAgcguGACCg -3'
miRNA:   3'- -CCGCcu--UGUACaUG--------------UCGCCCGU----CUGG- -5'
13957 5' -54.4 NC_003521.1 + 115690 0.67 0.977262
Target:  5'- aGGCGGAACAgccgguguccGUACAGCGugcccagggagaagaGgauguugccguuGCGGGCCa -3'
miRNA:   3'- -CCGCCUUGUa---------CAUGUCGC---------------C------------CGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.