miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 57736 0.68 0.993428
Target:  5'- --cGCAGAAGAGaucGCCGUCGCCc--- -3'
miRNA:   3'- gguCGUCUUCUUc--UGGUAGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 58035 0.66 0.998911
Target:  5'- aCGGC-GAuuguGGGAUCGUCGCCgucggUCCu -3'
miRNA:   3'- gGUCGuCUuc--UUCUGGUAGCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 58083 0.73 0.912774
Target:  5'- gCAGCAGAGGAgAGuCC-UCGCCUUg- -3'
miRNA:   3'- gGUCGUCUUCU-UCuGGuAGCGGAAgg -5'
13958 3' -50.9 NC_003521.1 + 61072 0.67 0.996893
Target:  5'- gCCAGCAGcggcucguagGAGAcgGGACCGUCGgaaagCCg -3'
miRNA:   3'- -GGUCGUC----------UUCU--UCUGGUAGCggaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 62798 0.67 0.997767
Target:  5'- cCCGGCGucuuuGAcGACCGUgGCCgccUCCg -3'
miRNA:   3'- -GGUCGUcuu--CUuCUGGUAgCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 63224 0.67 0.996893
Target:  5'- uCCGGCAGcGGAAcGGCCGgaaccggcggCGCCg-CCa -3'
miRNA:   3'- -GGUCGUCuUCUU-CUGGUa---------GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 64950 0.68 0.993428
Target:  5'- -uGGCAGGAGGAGGCCGagaaGCUg-CCg -3'
miRNA:   3'- ggUCGUCUUCUUCUGGUag--CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 65092 0.68 0.995069
Target:  5'- aCCGGCgccaGGAGGAAGAgCggCGCCg--- -3'
miRNA:   3'- -GGUCG----UCUUCUUCUgGuaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 67475 0.71 0.969833
Target:  5'- aCCAGguGAA--GGGCU-UCGCCUUCg -3'
miRNA:   3'- -GGUCguCUUcuUCUGGuAGCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 68683 0.67 0.995755
Target:  5'- gCCGGCGGA-----GCCGUCGCCgcgggacCCg -3'
miRNA:   3'- -GGUCGUCUucuucUGGUAGCGGaa-----GG- -5'
13958 3' -50.9 NC_003521.1 + 69510 0.67 0.997767
Target:  5'- --cGCAGGccgcguuGAGGcCCAgcacCGCCUUCCa -3'
miRNA:   3'- gguCGUCUu------CUUCuGGUa---GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 70318 0.68 0.994296
Target:  5'- cCCAGCAGc--GAGGCgGUgaCGCCgUCCa -3'
miRNA:   3'- -GGUCGUCuucUUCUGgUA--GCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 70417 0.69 0.985779
Target:  5'- -aAGCGcAGGAAGGCCAccgUCGCCgaaaCCg -3'
miRNA:   3'- ggUCGUcUUCUUCUGGU---AGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 70693 0.68 0.993428
Target:  5'- uCCAcGCGGuuucGgcGACgGUgGCCUUCCu -3'
miRNA:   3'- -GGU-CGUCuu--CuuCUGgUAgCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 70864 0.66 0.999247
Target:  5'- cCCAGgAGGAGAGcaacgacGACaUAUCGCCacaCCa -3'
miRNA:   3'- -GGUCgUCUUCUU-------CUG-GUAGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 71099 0.67 0.99736
Target:  5'- gCGGCGGggGAcgcuuuccaugAGGCCuugcugCGCCUcUUCg -3'
miRNA:   3'- gGUCGUCuuCU-----------UCUGGua----GCGGA-AGG- -5'
13958 3' -50.9 NC_003521.1 + 71120 0.68 0.993428
Target:  5'- -uGGgGGAcgucGGggGACuCGUCGCCgccUCCu -3'
miRNA:   3'- ggUCgUCU----UCuuCUG-GUAGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 71454 0.68 0.994296
Target:  5'- --cGCGGggGAAGACaugCGCCcgCUg -3'
miRNA:   3'- gguCGUCuuCUUCUGguaGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 72407 0.67 0.995558
Target:  5'- aCCAGCggcggaggcacugaGGAAGAGGGCgAguccUCGCCgUCg -3'
miRNA:   3'- -GGUCG--------------UCUUCUUCUGgU----AGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 73633 0.69 0.987385
Target:  5'- gCCAGCccaAGcAGAAGGCCucCGCCgcggCCg -3'
miRNA:   3'- -GGUCG---UCuUCUUCUGGuaGCGGaa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.