miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 33067 0.67 0.996893
Target:  5'- cCCAGCGGGuccauGAAGAUg---GCCUUCUg -3'
miRNA:   3'- -GGUCGUCUu----CUUCUGguagCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 33656 0.69 0.988848
Target:  5'- gCCAGCAGAGcGGGAuCCAgCGaCCggCCg -3'
miRNA:   3'- -GGUCGUCUUcUUCU-GGUaGC-GGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 35679 0.68 0.994296
Target:  5'- aCCcGCAGAcagcAGAAGGCCuucuGUCGCgCggCCc -3'
miRNA:   3'- -GGuCGUCU----UCUUCUGG----UAGCG-GaaGG- -5'
13958 3' -50.9 NC_003521.1 + 35938 0.68 0.994213
Target:  5'- aCAGCAGGaguucgaAGAAGAagUCGagcUCGCCUgCCg -3'
miRNA:   3'- gGUCGUCU-------UCUUCU--GGU---AGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 36297 0.66 0.998453
Target:  5'- aCGGC-GAAGAGGGCCAagacggucguggggcCGCCaccUCCg -3'
miRNA:   3'- gGUCGuCUUCUUCUGGUa--------------GCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 36783 0.71 0.956396
Target:  5'- cCUGGCGGGcguGGAGGACg--CGCCUUUCg -3'
miRNA:   3'- -GGUCGUCU---UCUUCUGguaGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 39832 0.76 0.829145
Target:  5'- gCCGGCAGGAcuccgaugcgaacucGGAGGggaucuCCAUCGCuCUUCCg -3'
miRNA:   3'- -GGUCGUCUU---------------CUUCU------GGUAGCG-GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 39953 0.71 0.960081
Target:  5'- uCCAGCAGcguaucGGAGGA--AUCGCCgUCCg -3'
miRNA:   3'- -GGUCGUCu-----UCUUCUggUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 40190 0.66 0.998367
Target:  5'- gCUGGCGGAGGAcauCCAcaucuacaucgaCGCCUUCCc -3'
miRNA:   3'- -GGUCGUCUUCUucuGGUa-----------GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 41027 0.71 0.966794
Target:  5'- aCCAGaCGG-AGAcgcugcAGGCCAUCcguaccaccgaaGCCUUCCu -3'
miRNA:   3'- -GGUC-GUCuUCU------UCUGGUAG------------CGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 43075 0.7 0.977751
Target:  5'- gCAcCAGGAGAAGAUCGUgGCCUa-- -3'
miRNA:   3'- gGUcGUCUUCUUCUGGUAgCGGAagg -5'
13958 3' -50.9 NC_003521.1 + 44940 0.67 0.99736
Target:  5'- gUAGCAGAAGuacAGGUCGUCGCagagCCg -3'
miRNA:   3'- gGUCGUCUUCu--UCUGGUAGCGgaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 45235 0.67 0.99736
Target:  5'- gCGGCAGGGuucGggGAUCgcgguGUCGCCgcccUUCCu -3'
miRNA:   3'- gGUCGUCUU---CuuCUGG-----UAGCGG----AAGG- -5'
13958 3' -50.9 NC_003521.1 + 45244 0.66 0.99812
Target:  5'- cCCGGCAGAcGGGccuGACCcccaaGCgCUUCCu -3'
miRNA:   3'- -GGUCGUCU-UCUu--CUGGuag--CG-GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 46441 0.66 0.998687
Target:  5'- uCCGGCGGGGcugcGggGGCUggucggccucGUCGUCgUCCu -3'
miRNA:   3'- -GGUCGUCUU----CuuCUGG----------UAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 47855 0.72 0.93403
Target:  5'- gCAGCAGGAGGAGgacuccgaccgccACCGUggcccgcucgcCGUCUUCCc -3'
miRNA:   3'- gGUCGUCUUCUUC-------------UGGUA-----------GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 50599 0.66 0.99889
Target:  5'- uCCAGCgcaaacgGGccGAGGACCcgCuGCCUcCCu -3'
miRNA:   3'- -GGUCG-------UCuuCUUCUGGuaG-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 53056 0.68 0.992354
Target:  5'- uCCAGguGGAGccGcACCGcCGCCUggacaucUCCa -3'
miRNA:   3'- -GGUCguCUUCuuC-UGGUaGCGGA-------AGG- -5'
13958 3' -50.9 NC_003521.1 + 54151 0.72 0.93937
Target:  5'- gCCGGCGuuGGAG-AGGCCGcCGCCU-CCg -3'
miRNA:   3'- -GGUCGU--CUUCuUCUGGUaGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 55461 0.69 0.985779
Target:  5'- gCCGGCGGAcu---GCCAUCGCCggUCg -3'
miRNA:   3'- -GGUCGUCUucuucUGGUAGCGGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.