miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 4306 0.7 0.977515
Target:  5'- -aGGCAGAGGGAcggccgggggcucGACCGUCcauGCCUggcgCCa -3'
miRNA:   3'- ggUCGUCUUCUU-------------CUGGUAG---CGGAa---GG- -5'
13958 3' -50.9 NC_003521.1 + 4606 0.66 0.998687
Target:  5'- gCCGcGCGGggGAAcauGACCucacccgcuccGUCGgCUUUCCu -3'
miRNA:   3'- -GGU-CGUCuuCUU---CUGG-----------UAGC-GGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 5393 0.68 0.993428
Target:  5'- gCCAGCAaGAGAcgacGACCAUCGCa---- -3'
miRNA:   3'- -GGUCGUcUUCUu---CUGGUAGCGgaagg -5'
13958 3' -50.9 NC_003521.1 + 5657 0.68 0.991376
Target:  5'- gCGGCGGAGGGuggggggucgAGACaCGggCGCCcgUCCg -3'
miRNA:   3'- gGUCGUCUUCU----------UCUG-GUa-GCGGa-AGG- -5'
13958 3' -50.9 NC_003521.1 + 17208 0.69 0.98402
Target:  5'- -uGGCGaGAGAAGAgCGUCGCCgUCg -3'
miRNA:   3'- ggUCGUcUUCUUCUgGUAGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 17388 0.71 0.960437
Target:  5'- gCCGGCAGGAucGAcGACC-UCGCCggguacgacggcgggUCCg -3'
miRNA:   3'- -GGUCGUCUU--CUuCUGGuAGCGGa--------------AGG- -5'
13958 3' -50.9 NC_003521.1 + 19727 0.73 0.906742
Target:  5'- gCGGUAGAGGAGGGguccUCGUCGUCcUCCu -3'
miRNA:   3'- gGUCGUCUUCUUCU----GGUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 19759 0.68 0.991376
Target:  5'- aCAGCugagaGGAAGAAGGCUGcCGCUUUgCg -3'
miRNA:   3'- gGUCG-----UCUUCUUCUGGUaGCGGAAgG- -5'
13958 3' -50.9 NC_003521.1 + 20685 0.66 0.999101
Target:  5'- gCGGC-GAAGAAGACagcgaacCGCCcgCCa -3'
miRNA:   3'- gGUCGuCUUCUUCUGgua----GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 21099 0.69 0.985779
Target:  5'- gCCAau-GGAGAgauAGACCGUUGCCU-CCg -3'
miRNA:   3'- -GGUcguCUUCU---UCUGGUAGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 21496 0.67 0.99636
Target:  5'- gCCAGCAGggGuu--CUguGUCGCuCUUUCg -3'
miRNA:   3'- -GGUCGUCuuCuucuGG--UAGCG-GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 26146 0.68 0.995069
Target:  5'- aCAGCGGGc--AGACCAUCGuCCUg-- -3'
miRNA:   3'- gGUCGUCUucuUCUGGUAGC-GGAagg -5'
13958 3' -50.9 NC_003521.1 + 27482 1.15 0.006346
Target:  5'- aCCAGCAGAAGAAGACCAUCGCCUUCCu -3'
miRNA:   3'- -GGUCGUCUUCUUCUGGUAGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 29775 0.71 0.960081
Target:  5'- -gAGCAGGAGGcucgGGACCcaguUCGCCUUa- -3'
miRNA:   3'- ggUCGUCUUCU----UCUGGu---AGCGGAAgg -5'
13958 3' -50.9 NC_003521.1 + 30912 0.67 0.99636
Target:  5'- gCGGCAGgcGAgagcgguccugGGGCaGUCGCCgugCCg -3'
miRNA:   3'- gGUCGUCuuCU-----------UCUGgUAGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 31192 0.66 0.998687
Target:  5'- aCGGCAcGgcGAcgugccccaGGACCGcucUCGCCUgCCg -3'
miRNA:   3'- gGUCGU-CuuCU---------UCUGGU---AGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 32156 0.66 0.999101
Target:  5'- gCGGCGGAAGgcG-CCcgCGUUgUUCCa -3'
miRNA:   3'- gGUCGUCUUCuuCuGGuaGCGG-AAGG- -5'
13958 3' -50.9 NC_003521.1 + 32741 0.67 0.997767
Target:  5'- aCCAGCGGGcgcGGAGGAaCCuccuUC-UCUUCCc -3'
miRNA:   3'- -GGUCGUCU---UCUUCU-GGu---AGcGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 32787 0.68 0.991376
Target:  5'- aCGGC-GA--GAGACCcgCGCCcUCCa -3'
miRNA:   3'- gGUCGuCUucUUCUGGuaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 32852 0.68 0.992457
Target:  5'- aCCGGCAGGgucuGGAGGCCGaucgguuuggCGCCcgcgCCg -3'
miRNA:   3'- -GGUCGUCUu---CUUCUGGUa---------GCGGaa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.