miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 187721 0.66 0.998687
Target:  5'- gCCAGCGGuacguGACuugucuCAUCGCCacgUCCa -3'
miRNA:   3'- -GGUCGUCuucuuCUG------GUAGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 207698 0.66 0.998687
Target:  5'- cCCuacGCGGAAaggcGAAGGCUuUCGCCacUCCu -3'
miRNA:   3'- -GGu--CGUCUU----CUUCUGGuAGCGGa-AGG- -5'
13958 3' -50.9 NC_003521.1 + 80544 0.66 0.998687
Target:  5'- gCCGGCGGAGcccAGGCCgcucaugagGUCGUCgagUCCc -3'
miRNA:   3'- -GGUCGUCUUcu-UCUGG---------UAGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 157259 0.66 0.998425
Target:  5'- -gAGCAaGAGAc--CCGUCGCCUuUCCg -3'
miRNA:   3'- ggUCGUcUUCUucuGGUAGCGGA-AGG- -5'
13958 3' -50.9 NC_003521.1 + 120422 0.66 0.99812
Target:  5'- aCAGguGAAGAGGAggacaCCGaugcUCGCg-UCCg -3'
miRNA:   3'- gGUCguCUUCUUCU-----GGU----AGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 212272 0.66 0.998425
Target:  5'- gCCGGCGGuagguAGAGGAUCAUCaGCgUgUCg -3'
miRNA:   3'- -GGUCGUCu----UCUUCUGGUAG-CGgAaGG- -5'
13958 3' -50.9 NC_003521.1 + 115922 0.66 0.998367
Target:  5'- gCGGUAGAGGuGAGGCCAguacgguuggggCGUCUUgCg -3'
miRNA:   3'- gGUCGUCUUC-UUCUGGUa-----------GCGGAAgG- -5'
13958 3' -50.9 NC_003521.1 + 4606 0.66 0.998687
Target:  5'- gCCGcGCGGggGAAcauGACCucacccgcuccGUCGgCUUUCCu -3'
miRNA:   3'- -GGU-CGUCuuCUU---CUGG-----------UAGC-GGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 114056 0.66 0.99812
Target:  5'- aCCAGCcugaacguGgcGAAGAUCGUCGUCc-CCa -3'
miRNA:   3'- -GGUCGu-------CuuCUUCUGGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 45244 0.66 0.99812
Target:  5'- cCCGGCAGAcGGGccuGACCcccaaGCgCUUCCu -3'
miRNA:   3'- -GGUCGUCU-UCUu--CUGGuag--CG-GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 223271 0.66 0.999262
Target:  5'- aCCGGCGGAcGAcGACCcccacCGCCauaCCa -3'
miRNA:   3'- -GGUCGUCUuCUuCUGGua---GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 148024 0.66 0.998425
Target:  5'- aCAGgauaaAGAGGAAGGCCGUCagGCUgucgCCc -3'
miRNA:   3'- gGUCg----UCUUCUUCUGGUAG--CGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 181756 0.66 0.998338
Target:  5'- gCAGaucaccaGGGAGAAGGCCcacagcgcccgguaGUCGCgaUCCu -3'
miRNA:   3'- gGUCg------UCUUCUUCUGG--------------UAGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 123495 0.66 0.998425
Target:  5'- gCCGGCGGGGuGucG-UCGUCGCCgcugCCg -3'
miRNA:   3'- -GGUCGUCUU-CuuCuGGUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 46441 0.66 0.998687
Target:  5'- uCCGGCGGGGcugcGggGGCUggucggccucGUCGUCgUCCu -3'
miRNA:   3'- -GGUCGUCUU----CuuCUGG----------UAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 235639 0.66 0.99812
Target:  5'- uUCAGUuGGGAGggGugCAcccUCGCCgccCCu -3'
miRNA:   3'- -GGUCG-UCUUCuuCugGU---AGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 144489 0.66 0.998687
Target:  5'- aCCuGC-GAGGAGGACCuggaCGCCgaCUg -3'
miRNA:   3'- -GGuCGuCUUCUUCUGGua--GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 97397 0.66 0.998425
Target:  5'- aCAaCGGucGGAGGAUCGUCGCCgUCg -3'
miRNA:   3'- gGUcGUCu-UCUUCUGGUAGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 141015 0.66 0.999101
Target:  5'- cCCAGCAcguGGAGGCCGUacugCGCCa--- -3'
miRNA:   3'- -GGUCGUcuuCUUCUGGUA----GCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 151651 0.66 0.998425
Target:  5'- uCCAGCAGGGccAGGCCcacggcccaGCCgUCCa -3'
miRNA:   3'- -GGUCGUCUUcuUCUGGuag------CGGaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.