miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 67475 0.71 0.969833
Target:  5'- aCCAGguGAA--GGGCU-UCGCCUUCg -3'
miRNA:   3'- -GGUCguCUUcuUCUGGuAGCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 76005 0.72 0.948346
Target:  5'- gUCAGCAcGuAGAAGACUcgGUCGCCcaCCg -3'
miRNA:   3'- -GGUCGU-CuUCUUCUGG--UAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 216139 0.72 0.952486
Target:  5'- gCGGCAGAGGAAGGCCAccugggCGCa---- -3'
miRNA:   3'- gGUCGUCUUCUUCUGGUa-----GCGgaagg -5'
13958 3' -50.9 NC_003521.1 + 36783 0.71 0.956396
Target:  5'- cCUGGCGGGcguGGAGGACg--CGCCUUUCg -3'
miRNA:   3'- -GGUCGUCU---UCUUCUGguaGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 29775 0.71 0.960081
Target:  5'- -gAGCAGGAGGcucgGGACCcaguUCGCCUUa- -3'
miRNA:   3'- ggUCGUCUUCU----UCUGGu---AGCGGAAgg -5'
13958 3' -50.9 NC_003521.1 + 39953 0.71 0.960081
Target:  5'- uCCAGCAGcguaucGGAGGA--AUCGCCgUCCg -3'
miRNA:   3'- -GGUCGUCu-----UCUUCUggUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 155669 0.71 0.960081
Target:  5'- gCGGCGGAGGucuGGACgauuCAUCGCCg-CCg -3'
miRNA:   3'- gGUCGUCUUCu--UCUG----GUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 214281 0.71 0.966794
Target:  5'- gCUGGUAGGAGGAGGCCAggaUGCCcaucaCCa -3'
miRNA:   3'- -GGUCGUCUUCUUCUGGUa--GCGGaa---GG- -5'
13958 3' -50.9 NC_003521.1 + 41027 0.71 0.966794
Target:  5'- aCCAGaCGG-AGAcgcugcAGGCCAUCcguaccaccgaaGCCUUCCu -3'
miRNA:   3'- -GGUC-GUCuUCU------UCUGGUAG------------CGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 186532 0.72 0.943073
Target:  5'- gCCAGCGGggGcuccgugggaggcAGGGCCGgcacgaacuUCGCCUgcuugucUCCa -3'
miRNA:   3'- -GGUCGUCuuC-------------UUCUGGU---------AGCGGA-------AGG- -5'
13958 3' -50.9 NC_003521.1 + 224026 0.72 0.93937
Target:  5'- cCCGGCGGucGggGcgggcGCCGUCGCC--CCu -3'
miRNA:   3'- -GGUCGUCuuCuuC-----UGGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 141989 0.72 0.93937
Target:  5'- gCAGCGGGAGcuGGCCcgCGCCa--- -3'
miRNA:   3'- gGUCGUCUUCuuCUGGuaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 166725 0.75 0.855042
Target:  5'- gCCAGCuaucauccuuggcGggGAAGACC-UCGCCcgCCa -3'
miRNA:   3'- -GGUCGu------------CuuCUUCUGGuAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 165009 0.74 0.873124
Target:  5'- cCCAGCG--AGGAGGCCGcgaUCGCCgcggcUUCCa -3'
miRNA:   3'- -GGUCGUcuUCUUCUGGU---AGCGG-----AAGG- -5'
13958 3' -50.9 NC_003521.1 + 164739 0.74 0.900475
Target:  5'- aCCAGCgcGGGAGggGGgCAUCGCggUCg -3'
miRNA:   3'- -GGUCG--UCUUCuuCUgGUAGCGgaAGg -5'
13958 3' -50.9 NC_003521.1 + 239845 0.74 0.900475
Target:  5'- cCCAGCGGGAGcAGACCGcCgGCCUcUCg -3'
miRNA:   3'- -GGUCGUCUUCuUCUGGUaG-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 58083 0.73 0.912774
Target:  5'- gCAGCAGAGGAgAGuCC-UCGCCUUg- -3'
miRNA:   3'- gGUCGUCUUCU-UCuGGuAGCGGAAgg -5'
13958 3' -50.9 NC_003521.1 + 134996 0.73 0.929447
Target:  5'- gUAGCAGggGcAGGCCGuggcgUCGcCCUUCUc -3'
miRNA:   3'- gGUCGUCuuCuUCUGGU-----AGC-GGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 54151 0.72 0.93937
Target:  5'- gCCGGCGuuGGAG-AGGCCGcCGCCU-CCg -3'
miRNA:   3'- -GGUCGU--CUUCuUCUGGUaGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 106041 0.72 0.93937
Target:  5'- -aAGCAGggGAAGACgCcgauGUCGCCcUCg -3'
miRNA:   3'- ggUCGUCuuCUUCUG-G----UAGCGGaAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.