miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 27482 1.15 0.006346
Target:  5'- aCCAGCAGAAGAAGACCAUCGCCUUCCu -3'
miRNA:   3'- -GGUCGUCUUCUUCUGGUAGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 128869 0.71 0.966794
Target:  5'- cUCAGCcccGAGAAcgccgugacGGCCAUCGCCUaCCa -3'
miRNA:   3'- -GGUCGuc-UUCUU---------CUGGUAGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 120854 0.7 0.972668
Target:  5'- aCCGGCAGGAGccGGCggccgcgccgugCAUCGCCUcgacacCCa -3'
miRNA:   3'- -GGUCGUCUUCuuCUG------------GUAGCGGAa-----GG- -5'
13958 3' -50.9 NC_003521.1 + 223271 0.66 0.999262
Target:  5'- aCCGGCGGAcGAcGACCcccacCGCCauaCCa -3'
miRNA:   3'- -GGUCGUCUuCUuCUGGua---GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 157259 0.74 0.893976
Target:  5'- -aAGUcGGAGGAGACCGUCGCgaUCUc -3'
miRNA:   3'- ggUCGuCUUCUUCUGGUAGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 141578 0.74 0.900475
Target:  5'- -aAGCAGAAGAGGGCUccggggCGCCgcCCg -3'
miRNA:   3'- ggUCGUCUUCUUCUGGua----GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 138348 0.73 0.906742
Target:  5'- cUCGGCcuGGGAGGGCCAgCGCCUcagcugUCCg -3'
miRNA:   3'- -GGUCGucUUCUUCUGGUaGCGGA------AGG- -5'
13958 3' -50.9 NC_003521.1 + 19727 0.73 0.906742
Target:  5'- gCGGUAGAGGAGGGguccUCGUCGUCcUCCu -3'
miRNA:   3'- gGUCGUCUUCUUCU----GGUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 162836 0.72 0.952486
Target:  5'- gCCGGCAGAGcgcuGAAGcCCGUCGCagacUCUa -3'
miRNA:   3'- -GGUCGUCUU----CUUCuGGUAGCGga--AGG- -5'
13958 3' -50.9 NC_003521.1 + 74466 0.71 0.963208
Target:  5'- -uGGCAGAAGAcggcgucGGGCCGcgCGCCgggcgCCg -3'
miRNA:   3'- ggUCGUCUUCU-------UCUGGUa-GCGGaa---GG- -5'
13958 3' -50.9 NC_003521.1 + 213183 0.71 0.960081
Target:  5'- -aGGaagGGGAGAAGACCG-CGCCgUCCu -3'
miRNA:   3'- ggUCg--UCUUCUUCUGGUaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 47855 0.72 0.93403
Target:  5'- gCAGCAGGAGGAGgacuccgaccgccACCGUggcccgcucgcCGUCUUCCc -3'
miRNA:   3'- gGUCGUCUUCUUC-------------UGGUA-----------GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 39832 0.76 0.829145
Target:  5'- gCCGGCAGGAcuccgaugcgaacucGGAGGggaucuCCAUCGCuCUUCCg -3'
miRNA:   3'- -GGUCGUCUU---------------CUUCU------GGUAGCG-GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 161058 0.71 0.960081
Target:  5'- -aAGUAGAcGAAGACCcgCGCCcgcgugCCg -3'
miRNA:   3'- ggUCGUCUuCUUCUGGuaGCGGaa----GG- -5'
13958 3' -50.9 NC_003521.1 + 233096 0.75 0.842337
Target:  5'- gCGGCGGggGAGGuACCGgggcagCGCCguagcUCCa -3'
miRNA:   3'- gGUCGUCuuCUUC-UGGUa-----GCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 196970 0.73 0.91857
Target:  5'- gCCGGU-GAAGucGGCCGUCGCUgcUCCu -3'
miRNA:   3'- -GGUCGuCUUCuuCUGGUAGCGGa-AGG- -5'
13958 3' -50.9 NC_003521.1 + 17388 0.71 0.960437
Target:  5'- gCCGGCAGGAucGAcGACC-UCGCCggguacgacggcgggUCCg -3'
miRNA:   3'- -GGUCGUCUU--CUuCUGGuAGCGGa--------------AGG- -5'
13958 3' -50.9 NC_003521.1 + 151978 0.71 0.969833
Target:  5'- cCCGcCAGGAcGAGGACCA-CGUCUUCa -3'
miRNA:   3'- -GGUcGUCUU-CUUCUGGUaGCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 103228 0.74 0.887249
Target:  5'- cCCAGCuacuGAGGAaacuGGACCAgaucaacCGCCUgUCCg -3'
miRNA:   3'- -GGUCGu---CUUCU----UCUGGUa------GCGGA-AGG- -5'
13958 3' -50.9 NC_003521.1 + 201470 0.74 0.900475
Target:  5'- cCCAGCGGGAGcAGACCGcCgGCCUcUCg -3'
miRNA:   3'- -GGUCGUCUUCuUCUGGUaG-CGGAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.