miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 27482 1.15 0.006346
Target:  5'- aCCAGCAGAAGAAGACCAUCGCCUUCCu -3'
miRNA:   3'- -GGUCGUCUUCUUCUGGUAGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 39832 0.76 0.829145
Target:  5'- gCCGGCAGGAcuccgaugcgaacucGGAGGggaucuCCAUCGCuCUUCCg -3'
miRNA:   3'- -GGUCGUCUU---------------CUUCU------GGUAGCG-GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 233096 0.75 0.842337
Target:  5'- gCGGCGGggGAGGuACCGgggcagCGCCguagcUCCa -3'
miRNA:   3'- gGUCGUCuuCUUC-UGGUa-----GCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 221761 0.75 0.850337
Target:  5'- cCCAGCugGGAGGAcgGGAucuccguuUCAUCGUCUUCCu -3'
miRNA:   3'- -GGUCG--UCUUCU--UCU--------GGUAGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 166725 0.75 0.855042
Target:  5'- gCCAGCuaucauccuuggcGggGAAGACC-UCGCCcgCCa -3'
miRNA:   3'- -GGUCGu------------CuuCUUCUGGuAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 165009 0.74 0.873124
Target:  5'- cCCAGCG--AGGAGGCCGcgaUCGCCgcggcUUCCa -3'
miRNA:   3'- -GGUCGUcuUCUUCUGGU---AGCGG-----AAGG- -5'
13958 3' -50.9 NC_003521.1 + 103228 0.74 0.887249
Target:  5'- cCCAGCuacuGAGGAaacuGGACCAgaucaacCGCCUgUCCg -3'
miRNA:   3'- -GGUCGu---CUUCU----UCUGGUa------GCGGA-AGG- -5'
13958 3' -50.9 NC_003521.1 + 157259 0.74 0.893976
Target:  5'- -aAGUcGGAGGAGACCGUCGCgaUCUc -3'
miRNA:   3'- ggUCGuCUUCUUCUGGUAGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 239845 0.74 0.900475
Target:  5'- cCCAGCGGGAGcAGACCGcCgGCCUcUCg -3'
miRNA:   3'- -GGUCGUCUUCuUCUGGUaG-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 141578 0.74 0.900475
Target:  5'- -aAGCAGAAGAGGGCUccggggCGCCgcCCg -3'
miRNA:   3'- ggUCGUCUUCUUCUGGua----GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 164739 0.74 0.900475
Target:  5'- aCCAGCgcGGGAGggGGgCAUCGCggUCg -3'
miRNA:   3'- -GGUCG--UCUUCuuCUgGUAGCGgaAGg -5'
13958 3' -50.9 NC_003521.1 + 201470 0.74 0.900475
Target:  5'- cCCAGCGGGAGcAGACCGcCgGCCUcUCg -3'
miRNA:   3'- -GGUCGUCUUCuUCUGGUaG-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 138348 0.73 0.906742
Target:  5'- cUCGGCcuGGGAGGGCCAgCGCCUcagcugUCCg -3'
miRNA:   3'- -GGUCGucUUCUUCUGGUaGCGGA------AGG- -5'
13958 3' -50.9 NC_003521.1 + 19727 0.73 0.906742
Target:  5'- gCGGUAGAGGAGGGguccUCGUCGUCcUCCu -3'
miRNA:   3'- gGUCGUCUUCUUCU----GGUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 58083 0.73 0.912774
Target:  5'- gCAGCAGAGGAgAGuCC-UCGCCUUg- -3'
miRNA:   3'- gGUCGUCUUCU-UCuGGuAGCGGAAgg -5'
13958 3' -50.9 NC_003521.1 + 196970 0.73 0.91857
Target:  5'- gCCGGU-GAAGucGGCCGUCGCUgcUCCu -3'
miRNA:   3'- -GGUCGuCUUCuuCUGGUAGCGGa-AGG- -5'
13958 3' -50.9 NC_003521.1 + 134996 0.73 0.929447
Target:  5'- gUAGCAGggGcAGGCCGuggcgUCGcCCUUCUc -3'
miRNA:   3'- gGUCGUCuuCuUCUGGU-----AGC-GGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 47855 0.72 0.93403
Target:  5'- gCAGCAGGAGGAGgacuccgaccgccACCGUggcccgcucgcCGUCUUCCc -3'
miRNA:   3'- gGUCGUCUUCUUC-------------UGGUA-----------GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 54151 0.72 0.93937
Target:  5'- gCCGGCGuuGGAG-AGGCCGcCGCCU-CCg -3'
miRNA:   3'- -GGUCGU--CUUCuUCUGGUaGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 224026 0.72 0.93937
Target:  5'- cCCGGCGGucGggGcgggcGCCGUCGCC--CCu -3'
miRNA:   3'- -GGUCGUCuuCuuC-----UGGUAGCGGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.