miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 240302 0.69 0.987385
Target:  5'- aUCGGCGGAGGAccGCCcggCGCCccgCCg -3'
miRNA:   3'- -GGUCGUCUUCUucUGGua-GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 239845 0.74 0.900475
Target:  5'- cCCAGCGGGAGcAGACCGcCgGCCUcUCg -3'
miRNA:   3'- -GGUCGUCUUCuUCUGGUaG-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 235744 0.67 0.996741
Target:  5'- uCCGGCGauagugguaagcccGuGAGAGGGCCcgCGCguuCUUCCa -3'
miRNA:   3'- -GGUCGU--------------C-UUCUUCUGGuaGCG---GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 235639 0.66 0.99812
Target:  5'- uUCAGUuGGGAGggGugCAcccUCGCCgccCCu -3'
miRNA:   3'- -GGUCG-UCUUCuuCugGU---AGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 235594 0.69 0.98561
Target:  5'- cCCGGCAGAaacaccAGAGGcgguguaGCCGUCGCa-UCUg -3'
miRNA:   3'- -GGUCGUCU------UCUUC-------UGGUAGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 235215 0.66 0.998911
Target:  5'- uCC-GCAGGcuGGAG-CCGUCGUCgUCCu -3'
miRNA:   3'- -GGuCGUCUu-CUUCuGGUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 233725 0.66 0.999262
Target:  5'- gCCuGgAGAAGGAGgacGCCGcCGCCgcgUCUg -3'
miRNA:   3'- -GGuCgUCUUCUUC---UGGUaGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 233096 0.75 0.842337
Target:  5'- gCGGCGGggGAGGuACCGgggcagCGCCguagcUCCa -3'
miRNA:   3'- gGUCGUCuuCUUC-UGGUa-----GCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 231783 0.7 0.982888
Target:  5'- cCCuGCAGAAGAcgcucauucucacggAGuCCGUgGCUUUCUg -3'
miRNA:   3'- -GGuCGUCUUCU---------------UCuGGUAgCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 227183 0.72 0.952486
Target:  5'- cCCGGCGcGGAGggGGCCGcggaggccgCGCUggCCg -3'
miRNA:   3'- -GGUCGU-CUUCuuCUGGUa--------GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 227091 0.69 0.990175
Target:  5'- gCGGCGGgcGAGGACCccauggCGCUguaCCg -3'
miRNA:   3'- gGUCGUCuuCUUCUGGua----GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 225554 0.68 0.993428
Target:  5'- aCCAggcaguGCAGAcGggGACCcgUGUCgUCCu -3'
miRNA:   3'- -GGU------CGUCUuCuuCUGGuaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 224026 0.72 0.93937
Target:  5'- cCCGGCGGucGggGcgggcGCCGUCGCC--CCu -3'
miRNA:   3'- -GGUCGUCuuCuuC-----UGGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 223271 0.66 0.999262
Target:  5'- aCCGGCGGAcGAcGACCcccacCGCCauaCCa -3'
miRNA:   3'- -GGUCGUCUuCUuCUGGua---GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 222311 0.7 0.980014
Target:  5'- aCCAcGCAGGcgguGGAGGGCCAgcgcUGCUUUCg -3'
miRNA:   3'- -GGU-CGUCU----UCUUCUGGUa---GCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 221761 0.75 0.850337
Target:  5'- cCCAGCugGGAGGAcgGGAucuccguuUCAUCGUCUUCCu -3'
miRNA:   3'- -GGUCG--UCUUCU--UCU--------GGUAGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 220810 0.67 0.99736
Target:  5'- cUCAGCGGAgugcGGuGGAUC-UCGCCggcgCCa -3'
miRNA:   3'- -GGUCGUCU----UCuUCUGGuAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 220273 0.67 0.99736
Target:  5'- --uGCAGAAGcuGAUCAUgacgcugagCGCCUUCUc -3'
miRNA:   3'- gguCGUCUUCuuCUGGUA---------GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 219871 0.67 0.99636
Target:  5'- aUCAGCAuGAGGAacaGGGCCAUCaCg-UCCa -3'
miRNA:   3'- -GGUCGU-CUUCU---UCUGGUAGcGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 219006 0.69 0.985779
Target:  5'- gCAGCAu-GGggGACCGUC-CCgacgCCg -3'
miRNA:   3'- gGUCGUcuUCuuCUGGUAGcGGaa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.