miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 148024 0.66 0.998425
Target:  5'- aCAGgauaaAGAGGAAGGCCGUCagGCUgucgCCc -3'
miRNA:   3'- gGUCg----UCUUCUUCUGGUAG--CGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 123495 0.66 0.998425
Target:  5'- gCCGGCGGGGuGucG-UCGUCGCCgcugCCg -3'
miRNA:   3'- -GGUCGUCUU-CuuCuGGUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 157259 0.66 0.998425
Target:  5'- -gAGCAaGAGAc--CCGUCGCCUuUCCg -3'
miRNA:   3'- ggUCGUcUUCUucuGGUAGCGGA-AGG- -5'
13958 3' -50.9 NC_003521.1 + 212272 0.66 0.998425
Target:  5'- gCCGGCGGuagguAGAGGAUCAUCaGCgUgUCg -3'
miRNA:   3'- -GGUCGUCu----UCUUCUGGUAG-CGgAaGG- -5'
13958 3' -50.9 NC_003521.1 + 97397 0.66 0.998425
Target:  5'- aCAaCGGucGGAGGAUCGUCGCCgUCg -3'
miRNA:   3'- gGUcGUCu-UCUUCUGGUAGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 151651 0.66 0.998425
Target:  5'- uCCAGCAGGGccAGGCCcacggcccaGCCgUCCa -3'
miRNA:   3'- -GGUCGUCUUcuUCUGGuag------CGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 40190 0.66 0.998367
Target:  5'- gCUGGCGGAGGAcauCCAcaucuacaucgaCGCCUUCCc -3'
miRNA:   3'- -GGUCGUCUUCUucuGGUa-----------GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 115922 0.66 0.998367
Target:  5'- gCGGUAGAGGuGAGGCCAguacgguuggggCGUCUUgCg -3'
miRNA:   3'- gGUCGUCUUC-UUCUGGUa-----------GCGGAAgG- -5'
13958 3' -50.9 NC_003521.1 + 181756 0.66 0.998338
Target:  5'- gCAGaucaccaGGGAGAAGGCCcacagcgcccgguaGUCGCgaUCCu -3'
miRNA:   3'- gGUCg------UCUUCUUCUGG--------------UAGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 139122 0.66 0.99812
Target:  5'- uCCAcGCAGAAGGugcAGcCCAUCugGCCgcaggCCg -3'
miRNA:   3'- -GGU-CGUCUUCU---UCuGGUAG--CGGaa---GG- -5'
13958 3' -50.9 NC_003521.1 + 235639 0.66 0.99812
Target:  5'- uUCAGUuGGGAGggGugCAcccUCGCCgccCCu -3'
miRNA:   3'- -GGUCG-UCUUCuuCugGU---AGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 120422 0.66 0.99812
Target:  5'- aCAGguGAAGAGGAggacaCCGaugcUCGCg-UCCg -3'
miRNA:   3'- gGUCguCUUCUUCU-----GGU----AGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 45244 0.66 0.99812
Target:  5'- cCCGGCAGAcGGGccuGACCcccaaGCgCUUCCu -3'
miRNA:   3'- -GGUCGUCU-UCUu--CUGGuag--CG-GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 114056 0.66 0.99812
Target:  5'- aCCAGCcugaacguGgcGAAGAUCGUCGUCc-CCa -3'
miRNA:   3'- -GGUCGu-------CuuCUUCUGGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 212608 0.66 0.998087
Target:  5'- aCCAGCGGGugguGAugggcguGACCGUCGggcucgucuacgcCCUUCa -3'
miRNA:   3'- -GGUCGUCUu---CUu------CUGGUAGC-------------GGAAGg -5'
13958 3' -50.9 NC_003521.1 + 215286 0.67 0.997767
Target:  5'- --uGCAGAGGcAGGCCAcCGCCa--- -3'
miRNA:   3'- gguCGUCUUCuUCUGGUaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 32741 0.67 0.997767
Target:  5'- aCCAGCGGGcgcGGAGGAaCCuccuUC-UCUUCCc -3'
miRNA:   3'- -GGUCGUCU---UCUUCU-GGu---AGcGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 69510 0.67 0.997767
Target:  5'- --cGCAGGccgcguuGAGGcCCAgcacCGCCUUCCa -3'
miRNA:   3'- gguCGUCUu------CUUCuGGUa---GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 186362 0.67 0.997767
Target:  5'- gCGGCAGgcGucGAuaaCCAUCGCC--CCg -3'
miRNA:   3'- gGUCGUCuuCuuCU---GGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 62798 0.67 0.997767
Target:  5'- cCCGGCGucuuuGAcGACCGUgGCCgccUCCg -3'
miRNA:   3'- -GGUCGUcuu--CUuCUGGUAgCGGa--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.