miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 160522 0.66 0.998911
Target:  5'- aCCAGgcaaccCGGGAGAAGcGCgCG-CGCCUUUCa -3'
miRNA:   3'- -GGUC------GUCUUCUUC-UG-GUaGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 77320 0.66 0.998911
Target:  5'- -gAGCAGAuggcccucaAGguGACCugcaaCGCCUUCUa -3'
miRNA:   3'- ggUCGUCU---------UCuuCUGGua---GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 58035 0.66 0.998911
Target:  5'- aCGGC-GAuuguGGGAUCGUCGCCgucggUCCu -3'
miRNA:   3'- gGUCGuCUuc--UUCUGGUAGCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 50599 0.66 0.99889
Target:  5'- uCCAGCgcaaacgGGccGAGGACCcgCuGCCUcCCu -3'
miRNA:   3'- -GGUCG-------UCuuCUUCUGGuaG-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 156373 0.66 0.998847
Target:  5'- aCgGGCgAGAAGGAGACgcgggcacugccguCGUCGUCUUgCu -3'
miRNA:   3'- -GgUCG-UCUUCUUCUG--------------GUAGCGGAAgG- -5'
13958 3' -50.9 NC_003521.1 + 31192 0.66 0.998687
Target:  5'- aCGGCAcGgcGAcgugccccaGGACCGcucUCGCCUgCCg -3'
miRNA:   3'- gGUCGU-CuuCU---------UCUGGU---AGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 207698 0.66 0.998687
Target:  5'- cCCuacGCGGAAaggcGAAGGCUuUCGCCacUCCu -3'
miRNA:   3'- -GGu--CGUCUU----CUUCUGGuAGCGGa-AGG- -5'
13958 3' -50.9 NC_003521.1 + 80544 0.66 0.998687
Target:  5'- gCCGGCGGAGcccAGGCCgcucaugagGUCGUCgagUCCc -3'
miRNA:   3'- -GGUCGUCUUcu-UCUGG---------UAGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 187721 0.66 0.998687
Target:  5'- gCCAGCGGuacguGACuugucuCAUCGCCacgUCCa -3'
miRNA:   3'- -GGUCGUCuucuuCUG------GUAGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 46441 0.66 0.998687
Target:  5'- uCCGGCGGGGcugcGggGGCUggucggccucGUCGUCgUCCu -3'
miRNA:   3'- -GGUCGUCUU----CuuCUGG----------UAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 144489 0.66 0.998687
Target:  5'- aCCuGC-GAGGAGGACCuggaCGCCgaCUg -3'
miRNA:   3'- -GGuCGuCUUCUUCUGGua--GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 131265 0.66 0.998687
Target:  5'- gCGGCAcGGAGAuGGCCA-CGUCgugacUCCg -3'
miRNA:   3'- gGUCGU-CUUCUuCUGGUaGCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 4606 0.66 0.998687
Target:  5'- gCCGcGCGGggGAAcauGACCucacccgcuccGUCGgCUUUCCu -3'
miRNA:   3'- -GGU-CGUCuuCUU---CUGG-----------UAGC-GGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 36297 0.66 0.998453
Target:  5'- aCGGC-GAAGAGGGCCAagacggucguggggcCGCCaccUCCg -3'
miRNA:   3'- gGUCGuCUUCUUCUGGUa--------------GCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 151651 0.66 0.998425
Target:  5'- uCCAGCAGGGccAGGCCcacggcccaGCCgUCCa -3'
miRNA:   3'- -GGUCGUCUUcuUCUGGuag------CGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 150938 0.66 0.998425
Target:  5'- cCCAGCAGcAGcGGcGCCGcCGCCggagagCCg -3'
miRNA:   3'- -GGUCGUCuUCuUC-UGGUaGCGGaa----GG- -5'
13958 3' -50.9 NC_003521.1 + 212272 0.66 0.998425
Target:  5'- gCCGGCGGuagguAGAGGAUCAUCaGCgUgUCg -3'
miRNA:   3'- -GGUCGUCu----UCUUCUGGUAG-CGgAaGG- -5'
13958 3' -50.9 NC_003521.1 + 136998 0.66 0.998425
Target:  5'- gCGGCAGGacgcGGAAGGCgGcgCGCUgccagUCCu -3'
miRNA:   3'- gGUCGUCU----UCUUCUGgUa-GCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 123495 0.66 0.998425
Target:  5'- gCCGGCGGGGuGucG-UCGUCGCCgcugCCg -3'
miRNA:   3'- -GGUCGUCUU-CuuCuGGUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 148024 0.66 0.998425
Target:  5'- aCAGgauaaAGAGGAAGGCCGUCagGCUgucgCCc -3'
miRNA:   3'- gGUCg----UCUUCUUCUGGUAG--CGGaa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.