Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13959 | 5' | -55.8 | NC_003521.1 | + | 27597 | 1.09 | 0.004768 |
Target: 5'- cGAGGUGGACGAGGAGUUCAAGCCCGAg -3' miRNA: 3'- -CUCCACCUGCUCCUCAAGUUCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 216252 | 0.76 | 0.494265 |
Target: 5'- gGAGGUGGACGAGGAGgcCGccgaguaguagcgccAGCUCGu -3' miRNA: 3'- -CUCCACCUGCUCCUCaaGU---------------UCGGGCu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 44280 | 0.74 | 0.626503 |
Target: 5'- uAGGUGGGCGAGGgcaggccguGGUugagCAGGCCCa- -3' miRNA: 3'- cUCCACCUGCUCC---------UCAa---GUUCGGGcu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 91365 | 0.74 | 0.636453 |
Target: 5'- -cGGUGGGgGAGGGGgccgaacccCGGGCCCGGa -3' miRNA: 3'- cuCCACCUgCUCCUCaa-------GUUCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 144919 | 0.71 | 0.762642 |
Target: 5'- -cGGUGGcCGAGGAGUUCAuGUCgCGc -3' miRNA: 3'- cuCCACCuGCUCCUCAAGUuCGG-GCu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 91524 | 0.71 | 0.797735 |
Target: 5'- gGAGGUGGGC--GGAGcgUCGaccggggAGCCCGAu -3' miRNA: 3'- -CUCCACCUGcuCCUCa-AGU-------UCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 133723 | 0.71 | 0.797735 |
Target: 5'- cGAGGUGGGC-AGGAGaugcucgguaugcUggccggCAGGCCCGGc -3' miRNA: 3'- -CUCCACCUGcUCCUC-------------Aa-----GUUCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 33591 | 0.7 | 0.807265 |
Target: 5'- cGAGGUGGugGAGaGcaccuGGUUCAAGCacaccuucgCCGGc -3' miRNA: 3'- -CUCCACCugCUC-C-----UCAAGUUCG---------GGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 165444 | 0.7 | 0.832303 |
Target: 5'- ---uUGGGCGAGGGGUggCAGGCCUuGAg -3' miRNA: 3'- cuccACCUGCUCCUCAa-GUUCGGG-CU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 203984 | 0.7 | 0.840315 |
Target: 5'- cGAGGcguaggacgacaUGGACGAcGAGcUCAuGCCCGAg -3' miRNA: 3'- -CUCC------------ACCUGCUcCUCaAGUuCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 105807 | 0.7 | 0.848148 |
Target: 5'- cGAGGaGGACGAGGAca-CGGGCgCGAc -3' miRNA: 3'- -CUCCaCCUGCUCCUcaaGUUCGgGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 154189 | 0.69 | 0.855795 |
Target: 5'- cGGGUGGcCGAGGAGUggAAGCUg-- -3' miRNA: 3'- cUCCACCuGCUCCUCAagUUCGGgcu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 78837 | 0.69 | 0.855795 |
Target: 5'- cGGGGUGGGCGucaacGGGGGUgcgaCAccGGCgCCGAc -3' miRNA: 3'- -CUCCACCUGC-----UCCUCAa---GU--UCG-GGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 217505 | 0.69 | 0.884418 |
Target: 5'- -uGGUGGGCGcGGGGGUgcuGGCCUGc -3' miRNA: 3'- cuCCACCUGC-UCCUCAaguUCGGGCu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 186937 | 0.69 | 0.884418 |
Target: 5'- aAGGagaGGACGAGGAGUgcuggGGGCCCc- -3' miRNA: 3'- cUCCa--CCUGCUCCUCAag---UUCGGGcu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 85838 | 0.68 | 0.893653 |
Target: 5'- -uGGUGGugGGGGGcGgcggcggcggcgccUCAGGCCCGu -3' miRNA: 3'- cuCCACCugCUCCU-Ca-------------AGUUCGGGCu -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 100726 | 0.68 | 0.903688 |
Target: 5'- gGAGGaGG-CGGGGGGUUCAugucgucGUCCGGg -3' miRNA: 3'- -CUCCaCCuGCUCCUCAAGUu------CGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 100233 | 0.68 | 0.903688 |
Target: 5'- cGAGGUGGAgcUGGGcGAGgu---GCCCGAc -3' miRNA: 3'- -CUCCACCU--GCUC-CUCaaguuCGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 84890 | 0.68 | 0.909673 |
Target: 5'- cGGGUGGcGCGAGuAGgccgUCAGcGCCCGGu -3' miRNA: 3'- cUCCACC-UGCUCcUCa---AGUU-CGGGCU- -5' |
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13959 | 5' | -55.8 | NC_003521.1 | + | 72943 | 0.68 | 0.909673 |
Target: 5'- uGGGUGGACGGGGcggaauagGGgcgccgccCAGGCCCa- -3' miRNA: 3'- cUCCACCUGCUCC--------UCaa------GUUCGGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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