miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13959 5' -55.8 NC_003521.1 + 216252 0.76 0.494265
Target:  5'- gGAGGUGGACGAGGAGgcCGccgaguaguagcgccAGCUCGu -3'
miRNA:   3'- -CUCCACCUGCUCCUCaaGU---------------UCGGGCu -5'
13959 5' -55.8 NC_003521.1 + 100598 0.66 0.96407
Target:  5'- -cGGUGGACGAGGcGgcgaagcgUCucuuGGCCgGGg -3'
miRNA:   3'- cuCCACCUGCUCCuCa-------AGu---UCGGgCU- -5'
13959 5' -55.8 NC_003521.1 + 145630 0.66 0.960735
Target:  5'- -cGGUgccGGGCGuGGAGUUCc-GCgCCGAg -3'
miRNA:   3'- cuCCA---CCUGCuCCUCAAGuuCG-GGCU- -5'
13959 5' -55.8 NC_003521.1 + 118704 0.66 0.957192
Target:  5'- gGAGGgcaggcucaUGGGCGAGGGGcgC-GGCaCCGGc -3'
miRNA:   3'- -CUCC---------ACCUGCUCCUCaaGuUCG-GGCU- -5'
13959 5' -55.8 NC_003521.1 + 10759 0.66 0.957192
Target:  5'- -cGGUGGACGuacggguGGAGUgUAAGCaCCa- -3'
miRNA:   3'- cuCCACCUGCu------CCUCAaGUUCG-GGcu -5'
13959 5' -55.8 NC_003521.1 + 104510 0.66 0.957192
Target:  5'- -uGGUGGuCGGcGAGUUCGucauGUCCGAc -3'
miRNA:   3'- cuCCACCuGCUcCUCAAGUu---CGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 214561 0.66 0.952269
Target:  5'- cGGGGUgcagugagcagcagGGGCGAGGGGUccUCcuGGCaCCGGu -3'
miRNA:   3'- -CUCCA--------------CCUGCUCCUCA--AGu-UCG-GGCU- -5'
13959 5' -55.8 NC_003521.1 + 58883 0.68 0.920972
Target:  5'- aGAGGUGGcGCGGcGAG-UCGcAGCCCGu -3'
miRNA:   3'- -CUCCACC-UGCUcCUCaAGU-UCGGGCu -5'
13959 5' -55.8 NC_003521.1 + 84890 0.68 0.909673
Target:  5'- cGGGUGGcGCGAGuAGgccgUCAGcGCCCGGu -3'
miRNA:   3'- cUCCACC-UGCUCcUCa---AGUU-CGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 100233 0.68 0.903688
Target:  5'- cGAGGUGGAgcUGGGcGAGgu---GCCCGAc -3'
miRNA:   3'- -CUCCACCU--GCUC-CUCaaguuCGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 91365 0.74 0.636453
Target:  5'- -cGGUGGGgGAGGGGgccgaacccCGGGCCCGGa -3'
miRNA:   3'- cuCCACCUgCUCCUCaa-------GUUCGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 144919 0.71 0.762642
Target:  5'- -cGGUGGcCGAGGAGUUCAuGUCgCGc -3'
miRNA:   3'- cuCCACCuGCUCCUCAAGUuCGG-GCu -5'
13959 5' -55.8 NC_003521.1 + 91524 0.71 0.797735
Target:  5'- gGAGGUGGGC--GGAGcgUCGaccggggAGCCCGAu -3'
miRNA:   3'- -CUCCACCUGcuCCUCa-AGU-------UCGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 133723 0.71 0.797735
Target:  5'- cGAGGUGGGC-AGGAGaugcucgguaugcUggccggCAGGCCCGGc -3'
miRNA:   3'- -CUCCACCUGcUCCUC-------------Aa-----GUUCGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 165444 0.7 0.832303
Target:  5'- ---uUGGGCGAGGGGUggCAGGCCUuGAg -3'
miRNA:   3'- cuccACCUGCUCCUCAa-GUUCGGG-CU- -5'
13959 5' -55.8 NC_003521.1 + 203984 0.7 0.840315
Target:  5'- cGAGGcguaggacgacaUGGACGAcGAGcUCAuGCCCGAg -3'
miRNA:   3'- -CUCC------------ACCUGCUcCUCaAGUuCGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 100726 0.68 0.903688
Target:  5'- gGAGGaGG-CGGGGGGUUCAugucgucGUCCGGg -3'
miRNA:   3'- -CUCCaCCuGCUCCUCAAGUu------CGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 153838 0.66 0.965346
Target:  5'- cAGGUGGugGAGcGGcugugcgccgugcgcGUggccaaCGGGCCCGAg -3'
miRNA:   3'- cUCCACCugCUC-CU---------------CAa-----GUUCGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 44280 0.74 0.626503
Target:  5'- uAGGUGGGCGAGGgcaggccguGGUugagCAGGCCCa- -3'
miRNA:   3'- cUCCACCUGCUCC---------UCAa---GUUCGGGcu -5'
13959 5' -55.8 NC_003521.1 + 33591 0.7 0.807265
Target:  5'- cGAGGUGGugGAGaGcaccuGGUUCAAGCacaccuucgCCGGc -3'
miRNA:   3'- -CUCCACCugCUC-C-----UCAAGUUCG---------GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.