miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13959 5' -55.8 NC_003521.1 + 154189 0.69 0.855795
Target:  5'- cGGGUGGcCGAGGAGUggAAGCUg-- -3'
miRNA:   3'- cUCCACCuGCUCCUCAagUUCGGgcu -5'
13959 5' -55.8 NC_003521.1 + 91996 0.67 0.940865
Target:  5'- aGGGUGGAUGGGGgagGGUagGGGUCgGAa -3'
miRNA:   3'- cUCCACCUGCUCC---UCAagUUCGGgCU- -5'
13959 5' -55.8 NC_003521.1 + 77027 0.67 0.945276
Target:  5'- -uGGUGGugGAGGAGgggagaaCGGGgUCGGu -3'
miRNA:   3'- cuCCACCugCUCCUCaa-----GUUCgGGCU- -5'
13959 5' -55.8 NC_003521.1 + 153838 0.66 0.965346
Target:  5'- cAGGUGGugGAGcGGcugugcgccgugcgcGUggccaaCGGGCCCGAg -3'
miRNA:   3'- cUCCACCugCUC-CU---------------CAa-----GUUCGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 85838 0.68 0.893653
Target:  5'- -uGGUGGugGGGGGcGgcggcggcggcgccUCAGGCCCGu -3'
miRNA:   3'- cuCCACCugCUCCU-Ca-------------AGUUCGGGCu -5'
13959 5' -55.8 NC_003521.1 + 72943 0.68 0.909673
Target:  5'- uGGGUGGACGGGGcggaauagGGgcgccgccCAGGCCCa- -3'
miRNA:   3'- cUCCACCUGCUCC--------UCaa------GUUCGGGcu -5'
13959 5' -55.8 NC_003521.1 + 27597 1.09 0.004768
Target:  5'- cGAGGUGGACGAGGAGUUCAAGCCCGAg -3'
miRNA:   3'- -CUCCACCUGCUCCUCAAGUUCGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 44280 0.74 0.626503
Target:  5'- uAGGUGGGCGAGGgcaggccguGGUugagCAGGCCCa- -3'
miRNA:   3'- cUCCACCUGCUCC---------UCAa---GUUCGGGcu -5'
13959 5' -55.8 NC_003521.1 + 33591 0.7 0.807265
Target:  5'- cGAGGUGGugGAGaGcaccuGGUUCAAGCacaccuucgCCGGc -3'
miRNA:   3'- -CUCCACCugCUC-C-----UCAAGUUCG---------GGCU- -5'
13959 5' -55.8 NC_003521.1 + 120300 0.67 0.940865
Target:  5'- -cGGUGGGCGAGcGcgaccAGcUCAAGgCCGAc -3'
miRNA:   3'- cuCCACCUGCUC-C-----UCaAGUUCgGGCU- -5'
13959 5' -55.8 NC_003521.1 + 142516 0.67 0.93137
Target:  5'- cGAGucGGcCGAGGAGgagCGGGCCCGc -3'
miRNA:   3'- -CUCcaCCuGCUCCUCaa-GUUCGGGCu -5'
13959 5' -55.8 NC_003521.1 + 224187 0.67 0.923656
Target:  5'- gGAGGUggaGGACGAGGAGgcggacgaugaagaCGaggaagagccuauggAGCCCGAc -3'
miRNA:   3'- -CUCCA---CCUGCUCCUCaa------------GU---------------UCGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 78837 0.69 0.855795
Target:  5'- cGGGGUGGGCGucaacGGGGGUgcgaCAccGGCgCCGAc -3'
miRNA:   3'- -CUCCACCUGC-----UCCUCAa---GU--UCG-GGCU- -5'
13959 5' -55.8 NC_003521.1 + 229317 0.67 0.93623
Target:  5'- uGGGGacGGcucaucugcuGCGAGGAGUcccUCGAGCCCc- -3'
miRNA:   3'- -CUCCa-CC----------UGCUCCUCA---AGUUCGGGcu -5'
13959 5' -55.8 NC_003521.1 + 217505 0.69 0.884418
Target:  5'- -uGGUGGGCGcGGGGGUgcuGGCCUGc -3'
miRNA:   3'- cuCCACCUGC-UCCUCAaguUCGGGCu -5'
13959 5' -55.8 NC_003521.1 + 24562 0.68 0.920972
Target:  5'- gGAGG-GGACGAGGAag-CGAuaCCGAu -3'
miRNA:   3'- -CUCCaCCUGCUCCUcaaGUUcgGGCU- -5'
13959 5' -55.8 NC_003521.1 + 165333 0.67 0.940865
Target:  5'- uGGGGagGGGCG-GGAua-CGGGCCCGAg -3'
miRNA:   3'- -CUCCa-CCUGCuCCUcaaGUUCGGGCU- -5'
13959 5' -55.8 NC_003521.1 + 114305 0.67 0.945276
Target:  5'- cAGGcUGGuCGAGGAGga-GAGCgCGAc -3'
miRNA:   3'- cUCC-ACCuGCUCCUCaagUUCGgGCU- -5'
13959 5' -55.8 NC_003521.1 + 186937 0.69 0.884418
Target:  5'- aAGGagaGGACGAGGAGUgcuggGGGCCCc- -3'
miRNA:   3'- cUCCa--CCUGCUCCUCAag---UUCGGGcu -5'
13959 5' -55.8 NC_003521.1 + 79540 0.68 0.920972
Target:  5'- cAGGUGGACGGGGuGcucuucUUCGAcucGCCgGAg -3'
miRNA:   3'- cUCCACCUGCUCCuC------AAGUU---CGGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.