miRNA display CGI


Results 61 - 80 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13960 3' -60.9 NC_003521.1 + 108766 0.66 0.770787
Target:  5'- aUCGgaccCUAGGCGCUG-AGGCGCGgCAg -3'
miRNA:   3'- cAGCa---GGUCCGCGGCgUCUGUGCgGU- -5'
13960 3' -60.9 NC_003521.1 + 65364 0.66 0.770787
Target:  5'- -cUGUCCGGggagacggcGCGCCGCcGAUcguACGCCGa -3'
miRNA:   3'- caGCAGGUC---------CGCGGCGuCUG---UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 25562 0.66 0.770787
Target:  5'- uGUUGUgCAGGCgGCCGCggGGACAgGUgGg -3'
miRNA:   3'- -CAGCAgGUCCG-CGGCG--UCUGUgCGgU- -5'
13960 3' -60.9 NC_003521.1 + 123577 0.66 0.770787
Target:  5'- aGUCGUgCAG-CGCCGCGuGAUGCGUg- -3'
miRNA:   3'- -CAGCAgGUCcGCGGCGU-CUGUGCGgu -5'
13960 3' -60.9 NC_003521.1 + 85685 0.66 0.770787
Target:  5'- -gCGUCCAGcacGCGCCGCAGGuuCuCCAg -3'
miRNA:   3'- caGCAGGUC---CGCGGCGUCUguGcGGU- -5'
13960 3' -60.9 NC_003521.1 + 91635 0.66 0.770787
Target:  5'- --aGUCCucguGGcCGCCGguGGCgacgcGCGCCGa -3'
miRNA:   3'- cagCAGGu---CC-GCGGCguCUG-----UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 117638 0.66 0.770787
Target:  5'- uGUCGuUCCGccugcgacuGCGCCGCgAGACgguGCGCCGg -3'
miRNA:   3'- -CAGC-AGGUc--------CGCGGCG-UCUG---UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 142476 0.67 0.761871
Target:  5'- cGUCGUCau-GCGCUGuCAGACGC-CCGa -3'
miRNA:   3'- -CAGCAGgucCGCGGC-GUCUGUGcGGU- -5'
13960 3' -60.9 NC_003521.1 + 225837 0.67 0.761871
Target:  5'- uGUgGUCCAcGGCGCgcucgugguggUGCGGGCACagguGCCGg -3'
miRNA:   3'- -CAgCAGGU-CCGCG-----------GCGUCUGUG----CGGU- -5'
13960 3' -60.9 NC_003521.1 + 72166 0.67 0.761871
Target:  5'- ---cUCC-GGCGCCGUcGGCAUGCCc -3'
miRNA:   3'- cagcAGGuCCGCGGCGuCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 122662 0.67 0.761871
Target:  5'- cGUCGUCUGcGGCGgUGgGGugGCGUCGc -3'
miRNA:   3'- -CAGCAGGU-CCGCgGCgUCugUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 36713 0.67 0.761871
Target:  5'- -cCGagCAGGUGgaggCGCAGugGCGCCAc -3'
miRNA:   3'- caGCagGUCCGCg---GCGUCugUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 192022 0.67 0.759176
Target:  5'- cGUCGUcagguucugcaccgCCGGcguGCGCgGCAGACGCGgCGu -3'
miRNA:   3'- -CAGCA--------------GGUC---CGCGgCGUCUGUGCgGU- -5'
13960 3' -60.9 NC_003521.1 + 167519 0.67 0.759176
Target:  5'- aGUCGagcagCCAGGUcugcucggcguccuGCCGCAGGCAgaUGCUg -3'
miRNA:   3'- -CAGCa----GGUCCG--------------CGGCGUCUGU--GCGGu -5'
13960 3' -60.9 NC_003521.1 + 237979 0.67 0.756472
Target:  5'- gGUCGaaCCAGGCGUCGUcGGCGaucggucggcuggguCGCCAg -3'
miRNA:   3'- -CAGCa-GGUCCGCGGCGuCUGU---------------GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 75539 0.67 0.752853
Target:  5'- uGUCaGUUCAgcGGCGCCgGCGGcgGCuACGCCAg -3'
miRNA:   3'- -CAG-CAGGU--CCGCGG-CGUC--UG-UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 49826 0.67 0.752853
Target:  5'- -cCGUgCAGuGCGCCguGCAGACG-GCCGu -3'
miRNA:   3'- caGCAgGUC-CGCGG--CGUCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 223018 0.67 0.752853
Target:  5'- cGUCGUCCGccGGuCGCaCGgcCAG-CACGCCGa -3'
miRNA:   3'- -CAGCAGGU--CC-GCG-GC--GUCuGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 110644 0.67 0.752853
Target:  5'- cUCG-CCGGGCGCCGgcaCGGuCACgGCCc -3'
miRNA:   3'- cAGCaGGUCCGCGGC---GUCuGUG-CGGu -5'
13960 3' -60.9 NC_003521.1 + 168459 0.67 0.752853
Target:  5'- -gCGUgaUgGGGCGCUGguGGCugGUCAg -3'
miRNA:   3'- caGCA--GgUCCGCGGCguCUGugCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.