miRNA display CGI


Results 41 - 60 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13960 3' -60.9 NC_003521.1 + 112446 0.66 0.796843
Target:  5'- -gCGgcCCAGGCgGCCcugGUGGGCGCGCCc -3'
miRNA:   3'- caGCa-GGUCCG-CGG---CGUCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 230367 0.66 0.795992
Target:  5'- -cCGUCCccgAGuucgaaaacgcacGUGCCGCGGACAacCGCCGa -3'
miRNA:   3'- caGCAGG---UC-------------CGCGGCGUCUGU--GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 174084 0.66 0.78828
Target:  5'- uGUCGUCCAGuCGCgGCAcGAUG-GCCGg -3'
miRNA:   3'- -CAGCAGGUCcGCGgCGU-CUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 113493 0.66 0.78828
Target:  5'- aUCGUggCCGaccGGCaGCCGCuGACcaACGCCAa -3'
miRNA:   3'- cAGCA--GGU---CCG-CGGCGuCUG--UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 200335 0.66 0.78828
Target:  5'- -gCG-CUGcGGCGCCGU-GGCGCGCCGc -3'
miRNA:   3'- caGCaGGU-CCGCGGCGuCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 152621 0.66 0.78828
Target:  5'- gGUUGgucaCCAGGCGgCGCAGGCggaACGUg- -3'
miRNA:   3'- -CAGCa---GGUCCGCgGCGUCUG---UGCGgu -5'
13960 3' -60.9 NC_003521.1 + 46532 0.66 0.78828
Target:  5'- cGUCuucUCCAGGCGCaC-CAGGgccuCGCGCCGg -3'
miRNA:   3'- -CAGc--AGGUCCGCG-GcGUCU----GUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 45289 0.66 0.78828
Target:  5'- ----aCCGGGCGCCGCuGGGCcaggaGCCGg -3'
miRNA:   3'- cagcaGGUCCGCGGCG-UCUGug---CGGU- -5'
13960 3' -60.9 NC_003521.1 + 145856 0.66 0.78828
Target:  5'- -gCGUCUcuGGGCccgGCgGCGGGCgGCGCCGa -3'
miRNA:   3'- caGCAGG--UCCG---CGgCGUCUG-UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 23984 0.66 0.787417
Target:  5'- aGUCGUCC----GCCGCGGGCugcgaccuccugcGCGCCAu -3'
miRNA:   3'- -CAGCAGGuccgCGGCGUCUG-------------UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 109489 0.66 0.787417
Target:  5'- -gCG-CCAGGCGCUccagcgaGUGGuCGCGCCGg -3'
miRNA:   3'- caGCaGGUCCGCGG-------CGUCuGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 31830 0.66 0.779592
Target:  5'- cUCGgcCCGGGCGCCGaaGGugGCGUUg -3'
miRNA:   3'- cAGCa-GGUCCGCGGCg-UCugUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 39317 0.66 0.779592
Target:  5'- uUCGUC--GGCGUCGCGGGCG-GCUAg -3'
miRNA:   3'- cAGCAGguCCGCGGCGUCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 239544 0.66 0.779592
Target:  5'- uUCGUC--GGCGUCGCGGGCG-GCUAg -3'
miRNA:   3'- cAGCAGguCCGCGGCGUCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 61829 0.66 0.779592
Target:  5'- uUCGaggggCCcugggaGGGCGCCGCGGAaccgcgGCGCCu -3'
miRNA:   3'- cAGCa----GG------UCCGCGGCGUCUg-----UGCGGu -5'
13960 3' -60.9 NC_003521.1 + 152336 0.66 0.779592
Target:  5'- cUCGUUCGGGC-CCGCGccGACGCuGCUc -3'
miRNA:   3'- cAGCAGGUCCGcGGCGU--CUGUG-CGGu -5'
13960 3' -60.9 NC_003521.1 + 151855 0.66 0.779592
Target:  5'- --gGUacaGGGCGCUGCAGAUcaguCGCCGg -3'
miRNA:   3'- cagCAgg-UCCGCGGCGUCUGu---GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 102498 0.66 0.779592
Target:  5'- uGUCGUCCuGGGUGCUaaAGAU-CGCCGa -3'
miRNA:   3'- -CAGCAGG-UCCGCGGcgUCUGuGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 103294 0.66 0.774323
Target:  5'- cGUCGUaggccaCCAcGCGCCgguacuccagcaggcGCuGACGCGCCAg -3'
miRNA:   3'- -CAGCA------GGUcCGCGG---------------CGuCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 25562 0.66 0.770787
Target:  5'- uGUUGUgCAGGCgGCCGCggGGACAgGUgGg -3'
miRNA:   3'- -CAGCAgGUCCG-CGGCG--UCUGUgCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.