miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13960 3' -60.9 NC_003521.1 + 125097 0.66 0.813564
Target:  5'- --gGUgCAGGCGCUGCGGGaugggcacCACgGCCGc -3'
miRNA:   3'- cagCAgGUCCGCGGCGUCU--------GUG-CGGU- -5'
13960 3' -60.9 NC_003521.1 + 166591 0.66 0.812741
Target:  5'- cGUCGUCCAccgucacGGCGCCGaCGG-CcUGCUg -3'
miRNA:   3'- -CAGCAGGU-------CCGCGGC-GUCuGuGCGGu -5'
13960 3' -60.9 NC_003521.1 + 70241 0.66 0.811092
Target:  5'- uUCGUCUggagcuggaaauuuAGGCGUCauaGguGACGCGCUg -3'
miRNA:   3'- cAGCAGG--------------UCCGCGG---CguCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 45231 0.66 0.805273
Target:  5'- aUCGa--AGGCGCCGCccggcAGACGgGCCu -3'
miRNA:   3'- cAGCaggUCCGCGGCG-----UCUGUgCGGu -5'
13960 3' -60.9 NC_003521.1 + 124024 0.66 0.805273
Target:  5'- --aGUCgGGGUcgcgGCCGUAGACG-GCCAg -3'
miRNA:   3'- cagCAGgUCCG----CGGCGUCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 185764 0.66 0.805273
Target:  5'- -gCGcCUAGGgGCCGCgauggagcgcaAGACGCGUCu -3'
miRNA:   3'- caGCaGGUCCgCGGCG-----------UCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 22388 0.66 0.805273
Target:  5'- uGUCcUCCGuGGUGCCGCcGcugucGCugGCCAu -3'
miRNA:   3'- -CAGcAGGU-CCGCGGCGuC-----UGugCGGU- -5'
13960 3' -60.9 NC_003521.1 + 171185 0.66 0.804436
Target:  5'- cGUCGcugCCGGgaacaaaugacguGCGCCGCuGACGgGCUAu -3'
miRNA:   3'- -CAGCa--GGUC-------------CGCGGCGuCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 234281 0.66 0.804436
Target:  5'- cGUCGcCCugcccugGGGCGggaCGCAGAC-CGCCc -3'
miRNA:   3'- -CAGCaGG-------UCCGCg--GCGUCUGuGCGGu -5'
13960 3' -60.9 NC_003521.1 + 31723 0.66 0.796843
Target:  5'- -gCGUgCUGGGaCGCCGCGGcCACcGCCu -3'
miRNA:   3'- caGCA-GGUCC-GCGGCGUCuGUG-CGGu -5'
13960 3' -60.9 NC_003521.1 + 76606 0.66 0.796843
Target:  5'- -cCGUCCAGcCGCCGCuacCACcGCCGc -3'
miRNA:   3'- caGCAGGUCcGCGGCGucuGUG-CGGU- -5'
13960 3' -60.9 NC_003521.1 + 179404 0.66 0.796843
Target:  5'- cUCGcUCAGGUGCCGCAuGCuguCGCUg -3'
miRNA:   3'- cAGCaGGUCCGCGGCGUcUGu--GCGGu -5'
13960 3' -60.9 NC_003521.1 + 170894 0.66 0.796843
Target:  5'- -gCGUCC-GGCGUCGCgaagcAGGCGCGaCAg -3'
miRNA:   3'- caGCAGGuCCGCGGCG-----UCUGUGCgGU- -5'
13960 3' -60.9 NC_003521.1 + 14745 0.66 0.796843
Target:  5'- -gCGUgaCGGGCcgGCCGCggccgGGGCGCGCCu -3'
miRNA:   3'- caGCAg-GUCCG--CGGCG-----UCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 18982 0.66 0.796843
Target:  5'- --gGUCgAGgacGCGCCGCgcgacgagggAGACACGCCc -3'
miRNA:   3'- cagCAGgUC---CGCGGCG----------UCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 203249 0.66 0.796843
Target:  5'- -cCGUgCugcuGGUGCUGCGGACcUGCCGa -3'
miRNA:   3'- caGCAgGu---CCGCGGCGUCUGuGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 43815 0.66 0.796843
Target:  5'- uGUCGcagcagCCGGGUcagccgccgccgGCCGCGGGCcCGUCAc -3'
miRNA:   3'- -CAGCa-----GGUCCG------------CGGCGUCUGuGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 112446 0.66 0.796843
Target:  5'- -gCGgcCCAGGCgGCCcugGUGGGCGCGCCc -3'
miRNA:   3'- caGCa-GGUCCG-CGG---CGUCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 209247 0.66 0.796843
Target:  5'- -cCGUCUucgGGGaagaacgaGCCcCGGACGCGCCAu -3'
miRNA:   3'- caGCAGG---UCCg-------CGGcGUCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 211124 0.66 0.796843
Target:  5'- --aG-CCAGGCGCCGaGGACGCaGCgGa -3'
miRNA:   3'- cagCaGGUCCGCGGCgUCUGUG-CGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.