miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13960 3' -60.9 NC_003521.1 + 33167 0.69 0.620149
Target:  5'- -aCG-CCGGGgGCgGCGGGCACGgCGg -3'
miRNA:   3'- caGCaGGUCCgCGgCGUCUGUGCgGU- -5'
13960 3' -60.9 NC_003521.1 + 33471 0.69 0.629802
Target:  5'- uGUCGgCCGGccGCGCCGacccgagGGACGCGCCc -3'
miRNA:   3'- -CAGCaGGUC--CGCGGCg------UCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 34199 0.66 0.796843
Target:  5'- aUCGUggcccaCCAgGGCGgCGUAGACGgCGCCc -3'
miRNA:   3'- cAGCA------GGU-CCGCgGCGUCUGU-GCGGu -5'
13960 3' -60.9 NC_003521.1 + 34567 0.72 0.470624
Target:  5'- gGUCGgggugcaCCAGGCugacgccggGCUGCAGGCGCGCgCAg -3'
miRNA:   3'- -CAGCa------GGUCCG---------CGGCGUCUGUGCG-GU- -5'
13960 3' -60.9 NC_003521.1 + 35078 0.67 0.734542
Target:  5'- uUCcUCCGGGCGCUc--GACAUGCCGg -3'
miRNA:   3'- cAGcAGGUCCGCGGcguCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 35472 0.66 0.813564
Target:  5'- gGUCGUgCAcGGCgcagcugccGCCGCcgaGGAgGCGCCGu -3'
miRNA:   3'- -CAGCAgGU-CCG---------CGGCG---UCUgUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 35801 0.72 0.46183
Target:  5'- aUCcaUCGGGCGUCGCGG-CACGCCGu -3'
miRNA:   3'- cAGcaGGUCCGCGGCGUCuGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 36445 0.74 0.356271
Target:  5'- cUCGgCCAGGUG-CGUGGGCACGCCGu -3'
miRNA:   3'- cAGCaGGUCCGCgGCGUCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 36713 0.67 0.761871
Target:  5'- -cCGagCAGGUGgaggCGCAGugGCGCCAc -3'
miRNA:   3'- caGCagGUCCGCg---GCGUCugUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 37839 0.69 0.628836
Target:  5'- cGUCGUCCguccggaGGGCGUUacaCAGGCugGCCu -3'
miRNA:   3'- -CAGCAGG-------UCCGCGGc--GUCUGugCGGu -5'
13960 3' -60.9 NC_003521.1 + 39317 0.66 0.779592
Target:  5'- uUCGUC--GGCGUCGCGGGCG-GCUAg -3'
miRNA:   3'- cAGCAGguCCGCGGCGUCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 39426 0.67 0.715913
Target:  5'- -cCGUCCAGuC-CCGUAGGCGgCGCCGu -3'
miRNA:   3'- caGCAGGUCcGcGGCGUCUGU-GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 43239 0.72 0.444506
Target:  5'- gGUCGUCgguGGGCGCCgGCGGGuCGCGCUc -3'
miRNA:   3'- -CAGCAGg--UCCGCGG-CGUCU-GUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 43815 0.66 0.796843
Target:  5'- uGUCGcagcagCCGGGUcagccgccgccgGCCGCGGGCcCGUCAc -3'
miRNA:   3'- -CAGCa-----GGUCCG------------CGGCGUCUGuGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 45231 0.66 0.805273
Target:  5'- aUCGa--AGGCGCCGCccggcAGACGgGCCu -3'
miRNA:   3'- cAGCaggUCCGCGGCG-----UCUGUgCGGu -5'
13960 3' -60.9 NC_003521.1 + 45289 0.66 0.78828
Target:  5'- ----aCCGGGCGCCGCuGGGCcaggaGCCGg -3'
miRNA:   3'- cagcaGGUCCGCGGCG-UCUGug---CGGU- -5'
13960 3' -60.9 NC_003521.1 + 46078 0.73 0.427553
Target:  5'- gGUCGcgacgCCcGGCGUCGCAGACcuuguaGCGCCGc -3'
miRNA:   3'- -CAGCa----GGuCCGCGGCGUCUG------UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 46532 0.66 0.78828
Target:  5'- cGUCuucUCCAGGCGCaC-CAGGgccuCGCGCCGg -3'
miRNA:   3'- -CAGc--AGGUCCGCG-GcGUCU----GUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 47624 0.69 0.639456
Target:  5'- aUCGUCCAGGCgGCCGU-GACGgCGgCu -3'
miRNA:   3'- cAGCAGGUCCG-CGGCGuCUGU-GCgGu -5'
13960 3' -60.9 NC_003521.1 + 48365 0.67 0.715913
Target:  5'- -cCGUCCuggaaaccGGCGCCGCcGcCAUGCCc -3'
miRNA:   3'- caGCAGGu-------CCGCGGCGuCuGUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.