miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13960 3' -60.9 NC_003521.1 + 6510 0.69 0.620149
Target:  5'- --aGUCUcGGCGuCCGCGGGaGCGCCGg -3'
miRNA:   3'- cagCAGGuCCGC-GGCGUCUgUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 8422 0.68 0.658743
Target:  5'- cGUUG-CC--GUGCCGCAGGCGCaGCCAg -3'
miRNA:   3'- -CAGCaGGucCGCGGCGUCUGUG-CGGU- -5'
13960 3' -60.9 NC_003521.1 + 14745 0.66 0.796843
Target:  5'- -gCGUgaCGGGCcgGCCGCggccgGGGCGCGCCu -3'
miRNA:   3'- caGCAg-GUCCG--CGGCG-----UCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 16049 0.66 0.813564
Target:  5'- cGUgGUgCGGGCGCUGCuGcACAacUGCCGg -3'
miRNA:   3'- -CAgCAgGUCCGCGGCGuC-UGU--GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 18898 0.66 0.8209
Target:  5'- ----aCgAGGCGCCGCggcagccccgaagGGugGCGCCGc -3'
miRNA:   3'- cagcaGgUCCGCGGCG-------------UCugUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 18982 0.66 0.796843
Target:  5'- --gGUCgAGgacGCGCCGCgcgacgagggAGACACGCCc -3'
miRNA:   3'- cagCAGgUC---CGCGGCG----------UCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 20177 0.73 0.386903
Target:  5'- -gCGUCCAGGaccaccaGCCGCucccGCACGCCGu -3'
miRNA:   3'- caGCAGGUCCg------CGGCGuc--UGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 22388 0.66 0.805273
Target:  5'- uGUCcUCCGuGGUGCCGCcGcugucGCugGCCAu -3'
miRNA:   3'- -CAGcAGGU-CCGCGGCGuC-----UGugCGGU- -5'
13960 3' -60.9 NC_003521.1 + 23569 0.66 0.821708
Target:  5'- cUCGUCCgucauggugguGGGCGCgGgGGuGCugGCCu -3'
miRNA:   3'- cAGCAGG-----------UCCGCGgCgUC-UGugCGGu -5'
13960 3' -60.9 NC_003521.1 + 23984 0.66 0.787417
Target:  5'- aGUCGUCC----GCCGCGGGCugcgaccuccugcGCGCCAu -3'
miRNA:   3'- -CAGCAGGuccgCGGCGUCUG-------------UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 25562 0.66 0.770787
Target:  5'- uGUUGUgCAGGCgGCCGCggGGACAgGUgGg -3'
miRNA:   3'- -CAGCAgGUCCG-CGGCG--UCUGUgCGgU- -5'
13960 3' -60.9 NC_003521.1 + 27561 0.71 0.515795
Target:  5'- cGUCGUCCGGGCG--GUcGACGCGUCGg -3'
miRNA:   3'- -CAGCAGGUCCGCggCGuCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 28595 0.7 0.581681
Target:  5'- aUCGgCCAccGGCGguCCGCAGGcCGCGCCGg -3'
miRNA:   3'- cAGCaGGU--CCGC--GGCGUCU-GUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 29094 1.08 0.001924
Target:  5'- cGUCGUCCAGGCGCCGCAGACACGCCAg -3'
miRNA:   3'- -CAGCAGGUCCGCGGCGUCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 29417 0.67 0.715913
Target:  5'- --aGUCCGGGCcCCGguGACA-GCUAc -3'
miRNA:   3'- cagCAGGUCCGcGGCguCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 30445 0.67 0.723399
Target:  5'- -aUGUCCAGGCgGCCGagggugccgauGACGCGCa- -3'
miRNA:   3'- caGCAGGUCCG-CGGCgu---------CUGUGCGgu -5'
13960 3' -60.9 NC_003521.1 + 30921 0.7 0.571176
Target:  5'- -gCGgaaaaUAGGCGCCaugacgaGCAGGCGCGCCGc -3'
miRNA:   3'- caGCag---GUCCGCGG-------CGUCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 31723 0.66 0.796843
Target:  5'- -gCGUgCUGGGaCGCCGCGGcCACcGCCu -3'
miRNA:   3'- caGCA-GGUCC-GCGGCGUCuGUG-CGGu -5'
13960 3' -60.9 NC_003521.1 + 31830 0.66 0.779592
Target:  5'- cUCGgcCCGGGCGCCGaaGGugGCGUUg -3'
miRNA:   3'- cAGCa-GGUCCGCGGCg-UCugUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 33050 0.68 0.677953
Target:  5'- cGUCGUCCGGGgGagagGCGGAgacaucguCACGCCu -3'
miRNA:   3'- -CAGCAGGUCCgCgg--CGUCU--------GUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.