miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13960 3' -60.9 NC_003521.1 + 65364 0.66 0.770787
Target:  5'- -cUGUCCGGggagacggcGCGCCGCcGAUcguACGCCGa -3'
miRNA:   3'- caGCAGGUC---------CGCGGCGuCUG---UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 152621 0.66 0.78828
Target:  5'- gGUUGgucaCCAGGCGgCGCAGGCggaACGUg- -3'
miRNA:   3'- -CAGCa---GGUCCGCgGCGUCUG---UGCGgu -5'
13960 3' -60.9 NC_003521.1 + 112446 0.66 0.796843
Target:  5'- -gCGgcCCAGGCgGCCcugGUGGGCGCGCCc -3'
miRNA:   3'- caGCa-GGUCCG-CGG---CGUCUGUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 152336 0.66 0.779592
Target:  5'- cUCGUUCGGGC-CCGCGccGACGCuGCUc -3'
miRNA:   3'- cAGCAGGUCCGcGGCGU--CUGUG-CGGu -5'
13960 3' -60.9 NC_003521.1 + 31830 0.66 0.779592
Target:  5'- cUCGgcCCGGGCGCCGaaGGugGCGUUg -3'
miRNA:   3'- cAGCa-GGUCCGCGGCg-UCugUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 239544 0.66 0.779592
Target:  5'- uUCGUC--GGCGUCGCGGGCG-GCUAg -3'
miRNA:   3'- cAGCAGguCCGCGGCGUCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 108766 0.66 0.770787
Target:  5'- aUCGgaccCUAGGCGCUG-AGGCGCGgCAg -3'
miRNA:   3'- cAGCa---GGUCCGCGGCgUCUGUGCgGU- -5'
13960 3' -60.9 NC_003521.1 + 212654 0.66 0.821708
Target:  5'- -gCGaCCcgaagaGGGCGUCGCGGGCAugguCGCCGc -3'
miRNA:   3'- caGCaGG------UCCGCGGCGUCUGU----GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 151855 0.66 0.779592
Target:  5'- --gGUacaGGGCGCUGCAGAUcaguCGCCGg -3'
miRNA:   3'- cagCAgg-UCCGCGGCGUCUGu---GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 85685 0.66 0.770787
Target:  5'- -gCGUCCAGcacGCGCCGCAGGuuCuCCAg -3'
miRNA:   3'- caGCAGGUC---CGCGGCGUCUguGcGGU- -5'
13960 3' -60.9 NC_003521.1 + 46532 0.66 0.78828
Target:  5'- cGUCuucUCCAGGCGCaC-CAGGgccuCGCGCCGg -3'
miRNA:   3'- -CAGc--AGGUCCGCG-GcGUCU----GUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 103294 0.66 0.774323
Target:  5'- cGUCGUaggccaCCAcGCGCCgguacuccagcaggcGCuGACGCGCCAg -3'
miRNA:   3'- -CAGCA------GGUcCGCGG---------------CGuCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 31723 0.66 0.796843
Target:  5'- -gCGUgCUGGGaCGCCGCGGcCACcGCCu -3'
miRNA:   3'- caGCA-GGUCC-GCGGCGUCuGUG-CGGu -5'
13960 3' -60.9 NC_003521.1 + 76606 0.66 0.796843
Target:  5'- -cCGUCCAGcCGCCGCuacCACcGCCGc -3'
miRNA:   3'- caGCAGGUCcGCGGCGucuGUG-CGGU- -5'
13960 3' -60.9 NC_003521.1 + 123577 0.66 0.770787
Target:  5'- aGUCGUgCAG-CGCCGCGuGAUGCGUg- -3'
miRNA:   3'- -CAGCAgGUCcGCGGCGU-CUGUGCGgu -5'
13960 3' -60.9 NC_003521.1 + 196770 0.66 0.770787
Target:  5'- -cCGgCCGGcGCGaCCGCGGGCGCGgUAa -3'
miRNA:   3'- caGCaGGUC-CGC-GGCGUCUGUGCgGU- -5'
13960 3' -60.9 NC_003521.1 + 145856 0.66 0.78828
Target:  5'- -gCGUCUcuGGGCccgGCgGCGGGCgGCGCCGa -3'
miRNA:   3'- caGCAGG--UCCG---CGgCGUCUG-UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 109489 0.66 0.787417
Target:  5'- -gCG-CCAGGCGCUccagcgaGUGGuCGCGCCGg -3'
miRNA:   3'- caGCaGGUCCGCGG-------CGUCuGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 45289 0.66 0.78828
Target:  5'- ----aCCGGGCGCCGCuGGGCcaggaGCCGg -3'
miRNA:   3'- cagcaGGUCCGCGGCG-UCUGug---CGGU- -5'
13960 3' -60.9 NC_003521.1 + 25562 0.66 0.770787
Target:  5'- uGUUGUgCAGGCgGCCGCggGGACAgGUgGg -3'
miRNA:   3'- -CAGCAgGUCCG-CGGCG--UCUGUgCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.