miRNA display CGI


Results 21 - 40 of 210 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13960 3' -60.9 NC_003521.1 + 102294 0.66 0.813564
Target:  5'- cUCGUCCccgucguaguAGGCGuCCGCGG-CAuCGUCGu -3'
miRNA:   3'- cAGCAGG----------UCCGC-GGCGUCuGU-GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 35472 0.66 0.813564
Target:  5'- gGUCGUgCAcGGCgcagcugccGCCGCcgaGGAgGCGCCGu -3'
miRNA:   3'- -CAGCAgGU-CCG---------CGGCG---UCUgUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 125097 0.66 0.813564
Target:  5'- --gGUgCAGGCGCUGCGGGaugggcacCACgGCCGc -3'
miRNA:   3'- cagCAgGUCCGCGGCGUCU--------GUG-CGGU- -5'
13960 3' -60.9 NC_003521.1 + 228104 0.66 0.813564
Target:  5'- cUCGUCCAGGCuGuuGC--GCGCGUa- -3'
miRNA:   3'- cAGCAGGUCCG-CggCGucUGUGCGgu -5'
13960 3' -60.9 NC_003521.1 + 209247 0.66 0.796843
Target:  5'- -cCGUCUucgGGGaagaacgaGCCcCGGACGCGCCAu -3'
miRNA:   3'- caGCAGG---UCCg-------CGGcGUCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 43815 0.66 0.796843
Target:  5'- uGUCGcagcagCCGGGUcagccgccgccgGCCGCGGGCcCGUCAc -3'
miRNA:   3'- -CAGCa-----GGUCCG------------CGGCGUCUGuGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 117638 0.66 0.770787
Target:  5'- uGUCGuUCCGccugcgacuGCGCCGCgAGACgguGCGCCGg -3'
miRNA:   3'- -CAGC-AGGUc--------CGCGGCG-UCUG---UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 171185 0.66 0.804436
Target:  5'- cGUCGcugCCGGgaacaaaugacguGCGCCGCuGACGgGCUAu -3'
miRNA:   3'- -CAGCa--GGUC-------------CGCGGCGuCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 166591 0.66 0.812741
Target:  5'- cGUCGUCCAccgucacGGCGCCGaCGG-CcUGCUg -3'
miRNA:   3'- -CAGCAGGU-------CCGCGGC-GUCuGuGCGGu -5'
13960 3' -60.9 NC_003521.1 + 77506 0.66 0.8209
Target:  5'- --aGUgCCGcucGCGCCGCugaccguGGACACGCCGu -3'
miRNA:   3'- cagCA-GGUc--CGCGGCG-------UCUGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 91635 0.66 0.770787
Target:  5'- --aGUCCucguGGcCGCCGguGGCgacgcGCGCCGa -3'
miRNA:   3'- cagCAGGu---CC-GCGGCguCUG-----UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 126949 0.66 0.821708
Target:  5'- uGUCGcUguGcCGCCGCGGAaccCGCGCCGu -3'
miRNA:   3'- -CAGCaGguCcGCGGCGUCU---GUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 85320 0.66 0.813564
Target:  5'- cGUCGcUCCAgccuuggcccgcGGCccGCCGCAGGCcgGCGUCu -3'
miRNA:   3'- -CAGC-AGGU------------CCG--CGGCGUCUG--UGCGGu -5'
13960 3' -60.9 NC_003521.1 + 103858 0.66 0.813564
Target:  5'- cUCGUCCAGGC-UgGC-GAUcaGCGCCGa -3'
miRNA:   3'- cAGCAGGUCCGcGgCGuCUG--UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 34199 0.66 0.796843
Target:  5'- aUCGUggcccaCCAgGGCGgCGUAGACGgCGCCc -3'
miRNA:   3'- cAGCA------GGU-CCGCgGCGUCUGU-GCGGu -5'
13960 3' -60.9 NC_003521.1 + 234281 0.66 0.804436
Target:  5'- cGUCGcCCugcccugGGGCGggaCGCAGAC-CGCCc -3'
miRNA:   3'- -CAGCaGG-------UCCGCg--GCGUCUGuGCGGu -5'
13960 3' -60.9 NC_003521.1 + 45231 0.66 0.805273
Target:  5'- aUCGa--AGGCGCCGCccggcAGACGgGCCu -3'
miRNA:   3'- cAGCaggUCCGCGGCG-----UCUGUgCGGu -5'
13960 3' -60.9 NC_003521.1 + 78011 0.66 0.821708
Target:  5'- gGUCGUCCuuGCGCUGaccCAGAUACagcucgGCCAu -3'
miRNA:   3'- -CAGCAGGucCGCGGC---GUCUGUG------CGGU- -5'
13960 3' -60.9 NC_003521.1 + 39317 0.66 0.779592
Target:  5'- uUCGUC--GGCGUCGCGGGCG-GCUAg -3'
miRNA:   3'- cAGCAGguCCGCGGCGUCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 212654 0.66 0.821708
Target:  5'- -gCGaCCcgaagaGGGCGUCGCGGGCAugguCGCCGc -3'
miRNA:   3'- caGCaGG------UCCGCGGCGUCUGU----GCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.