miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13960 3' -60.9 NC_003521.1 + 240130 0.67 0.734542
Target:  5'- gGUCGUCCcGGCgGgCGCGGAaaGCGCUg -3'
miRNA:   3'- -CAGCAGGuCCG-CgGCGUCUg-UGCGGu -5'
13960 3' -60.9 NC_003521.1 + 239653 0.67 0.715913
Target:  5'- -cCGUCCAGuC-CCGUAGGCGgCGCCGu -3'
miRNA:   3'- caGCAGGUCcGcGGCGUCUGU-GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 239544 0.66 0.779592
Target:  5'- uUCGUC--GGCGUCGCGGGCG-GCUAg -3'
miRNA:   3'- cAGCAGguCCGCGGCGUCUGUgCGGU- -5'
13960 3' -60.9 NC_003521.1 + 239345 0.76 0.293766
Target:  5'- aGUCGUCCGGGCGuCUGCAGcgGgAUGCCc -3'
miRNA:   3'- -CAGCAGGUCCGC-GGCGUC--UgUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 237979 0.67 0.756472
Target:  5'- gGUCGaaCCAGGCGUCGUcGGCGaucggucggcuggguCGCCAg -3'
miRNA:   3'- -CAGCa-GGUCCGCGGCGuCUGU---------------GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 236545 0.67 0.743741
Target:  5'- cGUCGUUC-GGCGUCGCucgucGGCucCGCCGu -3'
miRNA:   3'- -CAGCAGGuCCGCGGCGu----CUGu-GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 234281 0.66 0.804436
Target:  5'- cGUCGcCCugcccugGGGCGggaCGCAGAC-CGCCc -3'
miRNA:   3'- -CAGCaGG-------UCCGCg--GCGUCUGuGCGGu -5'
13960 3' -60.9 NC_003521.1 + 232995 0.68 0.687512
Target:  5'- cUCGUCUucuGGCGCCGgAuGGCcuugACGCCGu -3'
miRNA:   3'- cAGCAGGu--CCGCGGCgU-CUG----UGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 230367 0.66 0.795992
Target:  5'- -cCGUCCccgAGuucgaaaacgcacGUGCCGCGGACAacCGCCGa -3'
miRNA:   3'- caGCAGG---UC-------------CGCGGCGUCUGU--GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 228104 0.66 0.813564
Target:  5'- cUCGUCCAGGCuGuuGC--GCGCGUa- -3'
miRNA:   3'- cAGCAGGUCCG-CggCGucUGUGCGgu -5'
13960 3' -60.9 NC_003521.1 + 225837 0.67 0.761871
Target:  5'- uGUgGUCCAcGGCGCgcucgugguggUGCGGGCACagguGCCGg -3'
miRNA:   3'- -CAgCAGGU-CCGCG-----------GCGUCUGUG----CGGU- -5'
13960 3' -60.9 NC_003521.1 + 225693 0.68 0.7065
Target:  5'- --gGUCCAGGCGCuCcCAGGCGC-CCu -3'
miRNA:   3'- cagCAGGUCCGCG-GcGUCUGUGcGGu -5'
13960 3' -60.9 NC_003521.1 + 225579 0.72 0.435982
Target:  5'- uGUCGUCCuGGCGCUcgGCGGccuCGCGCUc -3'
miRNA:   3'- -CAGCAGGuCCGCGG--CGUCu--GUGCGGu -5'
13960 3' -60.9 NC_003521.1 + 224076 0.67 0.725263
Target:  5'- cUCGUCCuccggcGGGCGCgCGCGccGGCGguCGCCGa -3'
miRNA:   3'- cAGCAGG------UCCGCG-GCGU--CUGU--GCGGU- -5'
13960 3' -60.9 NC_003521.1 + 223946 0.68 0.668361
Target:  5'- --gGUCgAGGCgGCCGCGGggaacGCACGUCGu -3'
miRNA:   3'- cagCAGgUCCG-CGGCGUC-----UGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 223766 0.73 0.394828
Target:  5'- cGUCGUCCucgcugucGGCGCCGUuaccgccguGGGC-CGCCAg -3'
miRNA:   3'- -CAGCAGGu-------CCGCGGCG---------UCUGuGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 223643 0.69 0.600874
Target:  5'- -gCGUCgGGGCGCCGC-GAUGuCGCUg -3'
miRNA:   3'- caGCAGgUCCGCGGCGuCUGU-GCGGu -5'
13960 3' -60.9 NC_003521.1 + 223018 0.67 0.752853
Target:  5'- cGUCGUCCGccGGuCGCaCGgcCAG-CACGCCGa -3'
miRNA:   3'- -CAGCAGGU--CC-GCG-GC--GUCuGUGCGGU- -5'
13960 3' -60.9 NC_003521.1 + 221917 0.67 0.725263
Target:  5'- cUCGggCCAGGCGUgcgaggggaagaUGCAcGACACGuCCAg -3'
miRNA:   3'- cAGCa-GGUCCGCG------------GCGU-CUGUGC-GGU- -5'
13960 3' -60.9 NC_003521.1 + 217379 0.68 0.658743
Target:  5'- -aCGgCCAGGCacaCCGUGGGCAcCGCCAg -3'
miRNA:   3'- caGCaGGUCCGc--GGCGUCUGU-GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.