miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13960 5' -57.2 NC_003521.1 + 58885 0.68 0.855653
Target:  5'- aGGUGGCGcGGCgaGUCGcagcccgucuccauGCGCAGGAu -3'
miRNA:   3'- -CCACUGC-CCGaaCAGCcu------------CGCGUCUU- -5'
13960 5' -57.2 NC_003521.1 + 117487 0.68 0.862352
Target:  5'- cGGcGACGGGCcUGUCcggcGGGGCGUAc-- -3'
miRNA:   3'- -CCaCUGCCCGaACAG----CCUCGCGUcuu -5'
13960 5' -57.2 NC_003521.1 + 221892 0.68 0.862352
Target:  5'- cGUGugGGGCggauUGcCGGcGCGCGGc- -3'
miRNA:   3'- cCACugCCCGa---ACaGCCuCGCGUCuu -5'
13960 5' -57.2 NC_003521.1 + 126292 0.68 0.869611
Target:  5'- -cUGACGuucGGCagcaUGUCGGAGCGCAa-- -3'
miRNA:   3'- ccACUGC---CCGa---ACAGCCUCGCGUcuu -5'
13960 5' -57.2 NC_003521.1 + 117515 0.67 0.876669
Target:  5'- cGGUGGCGGGa-UGgCGGcGGCGcCGGGAg -3'
miRNA:   3'- -CCACUGCCCgaACaGCC-UCGC-GUCUU- -5'
13960 5' -57.2 NC_003521.1 + 66862 0.67 0.883522
Target:  5'- cGGgucgGGCagGGGCgcGUCGGAGCuCAGAc -3'
miRNA:   3'- -CCa---CUG--CCCGaaCAGCCUCGcGUCUu -5'
13960 5' -57.2 NC_003521.1 + 84178 0.67 0.883522
Target:  5'- gGGcGACGGGC----CGGAGCGgGGGAc -3'
miRNA:   3'- -CCaCUGCCCGaacaGCCUCGCgUCUU- -5'
13960 5' -57.2 NC_003521.1 + 139250 0.67 0.883522
Target:  5'- aGGUGGCGGGCUccggGUUGuGGaugGCGGAc -3'
miRNA:   3'- -CCACUGCCCGAa---CAGCcUCg--CGUCUu -5'
13960 5' -57.2 NC_003521.1 + 156376 0.67 0.883522
Target:  5'- -cUGACGGGCgaGaaGGAGaCGCGGGc -3'
miRNA:   3'- ccACUGCCCGaaCagCCUC-GCGUCUu -5'
13960 5' -57.2 NC_003521.1 + 214434 0.67 0.883522
Target:  5'- gGGUGACGGuGCUgcagaaguugaUGaCGGcGGCGCuGAAg -3'
miRNA:   3'- -CCACUGCC-CGA-----------ACaGCC-UCGCGuCUU- -5'
13960 5' -57.2 NC_003521.1 + 194713 0.67 0.883522
Target:  5'- --cGACGcGGCUgugaGGGGCGCGGGGu -3'
miRNA:   3'- ccaCUGC-CCGAacagCCUCGCGUCUU- -5'
13960 5' -57.2 NC_003521.1 + 179826 0.67 0.890167
Target:  5'- cGGUGugGGGCcagUGUCgcagGGAGgaagccgaGCGGGAc -3'
miRNA:   3'- -CCACugCCCGa--ACAG----CCUCg-------CGUCUU- -5'
13960 5' -57.2 NC_003521.1 + 227689 0.67 0.896598
Target:  5'- --gGGCGGGCgucgUUGUgGGGGUGuCAGAu -3'
miRNA:   3'- ccaCUGCCCG----AACAgCCUCGC-GUCUu -5'
13960 5' -57.2 NC_003521.1 + 175672 0.67 0.902813
Target:  5'- aGGUGAguccCGGGCUUGUucaugcaugucaCGGGG-GUGGAAa -3'
miRNA:   3'- -CCACU----GCCCGAACA------------GCCUCgCGUCUU- -5'
13960 5' -57.2 NC_003521.1 + 190282 0.67 0.902813
Target:  5'- cGGUGAUGGcaGCggUGUCcccgguggugGGAGCGguGAc -3'
miRNA:   3'- -CCACUGCC--CGa-ACAG----------CCUCGCguCUu -5'
13960 5' -57.2 NC_003521.1 + 69420 0.66 0.909396
Target:  5'- cGGUGACGGcGCgcaccaccacggUGGAGuCGCAGGu -3'
miRNA:   3'- -CCACUGCC-CGaaca--------GCCUC-GCGUCUu -5'
13960 5' -57.2 NC_003521.1 + 139318 0.66 0.914583
Target:  5'- gGGUGaucuGCGGcGCcgUuUUGGAGCGCAGGu -3'
miRNA:   3'- -CCAC----UGCC-CGa-AcAGCCUCGCGUCUu -5'
13960 5' -57.2 NC_003521.1 + 170529 0.66 0.914583
Target:  5'- uGUGACGGGga---CGGGGgGCAGGAg -3'
miRNA:   3'- cCACUGCCCgaacaGCCUCgCGUCUU- -5'
13960 5' -57.2 NC_003521.1 + 55351 0.66 0.914583
Target:  5'- aGGUGaucgccgaGCGGGUgcGcCGGAGCGCcuAGGGg -3'
miRNA:   3'- -CCAC--------UGCCCGaaCaGCCUCGCG--UCUU- -5'
13960 5' -57.2 NC_003521.1 + 238468 0.66 0.920135
Target:  5'- --cGGCGGGCggGgCGGAGaCGCGGc- -3'
miRNA:   3'- ccaCUGCCCGaaCaGCCUC-GCGUCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.