miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13961 3' -53 NC_003521.1 + 212853 0.66 0.992457
Target:  5'- ---aUCcUGggGggcAGCGGUaUGGUCGUCg -3'
miRNA:   3'- caugAGuACuuC---UCGCCG-ACCAGCAG- -5'
13961 3' -53 NC_003521.1 + 181800 0.66 0.992457
Target:  5'- --cCUCGUGcgucAGGGCGG--GGUCGUCu -3'
miRNA:   3'- cauGAGUACu---UCUCGCCgaCCAGCAG- -5'
13961 3' -53 NC_003521.1 + 96032 0.66 0.988848
Target:  5'- aGUGUUCAUGAGgaagaggcuGAGgGGCUcGUCGUCc -3'
miRNA:   3'- -CAUGAGUACUU---------CUCgCCGAcCAGCAG- -5'
13961 3' -53 NC_003521.1 + 156564 0.66 0.988848
Target:  5'- cGUACUUcgGAGGuuauagucaAGCGGgUGGggGUCa -3'
miRNA:   3'- -CAUGAGuaCUUC---------UCGCCgACCagCAG- -5'
13961 3' -53 NC_003521.1 + 104157 0.66 0.987385
Target:  5'- gGUGCUC-UGcGGcGGCGGCgcgGGUCG-Ca -3'
miRNA:   3'- -CAUGAGuACuUC-UCGCCGa--CCAGCaG- -5'
13961 3' -53 NC_003521.1 + 196886 0.66 0.987385
Target:  5'- -cGCggGUGAggccGGGGCGGaaggcgGGUCGUCg -3'
miRNA:   3'- caUGagUACU----UCUCGCCga----CCAGCAG- -5'
13961 3' -53 NC_003521.1 + 166265 0.66 0.985779
Target:  5'- cGUGCUCAcGGgcacgcgcacGGcGCGGCUGGUCc-- -3'
miRNA:   3'- -CAUGAGUaCU----------UCuCGCCGACCAGcag -5'
13961 3' -53 NC_003521.1 + 69812 0.67 0.984742
Target:  5'- -cGCUCGcacuUGAggcgacacaggcaccAGAGCGGCaGGUCGa- -3'
miRNA:   3'- caUGAGU----ACU---------------UCUCGCCGaCCAGCag -5'
13961 3' -53 NC_003521.1 + 218316 0.67 0.98402
Target:  5'- -aACUCGUauAGAGCGuuGCUGGUCa-- -3'
miRNA:   3'- caUGAGUAcuUCUCGC--CGACCAGcag -5'
13961 3' -53 NC_003521.1 + 172340 0.67 0.98402
Target:  5'- -gACggGUGAGGGGCGGCgGGUUcugacgcagaaaGUCg -3'
miRNA:   3'- caUGagUACUUCUCGCCGaCCAG------------CAG- -5'
13961 3' -53 NC_003521.1 + 177939 0.67 0.982101
Target:  5'- -----gAUGggGAGUGGCcGGUCGg- -3'
miRNA:   3'- caugagUACuuCUCGCCGaCCAGCag -5'
13961 3' -53 NC_003521.1 + 127238 0.67 0.982101
Target:  5'- gGUcCUCcacGAAGAGCGGCUcGUCGg- -3'
miRNA:   3'- -CAuGAGua-CUUCUCGCCGAcCAGCag -5'
13961 3' -53 NC_003521.1 + 90811 0.67 0.980014
Target:  5'- cGUGCaCGUGAAG-GUGGC--GUCGUCg -3'
miRNA:   3'- -CAUGaGUACUUCuCGCCGacCAGCAG- -5'
13961 3' -53 NC_003521.1 + 121418 0.67 0.975305
Target:  5'- gGUGCUugcgCAUGAAGGGCuGCgGGUugcgCGUCa -3'
miRNA:   3'- -CAUGA----GUACUUCUCGcCGaCCA----GCAG- -5'
13961 3' -53 NC_003521.1 + 98490 0.68 0.972668
Target:  5'- ---gUCGUGGgcaacgAGGGCuGGgUGGUCGUCg -3'
miRNA:   3'- caugAGUACU------UCUCG-CCgACCAGCAG- -5'
13961 3' -53 NC_003521.1 + 170195 0.68 0.969833
Target:  5'- gGUGC-CGgugGAGGuAGUGGCacgaggGGUCGUCg -3'
miRNA:   3'- -CAUGaGUa--CUUC-UCGCCGa-----CCAGCAG- -5'
13961 3' -53 NC_003521.1 + 87049 0.68 0.966794
Target:  5'- aGUACUCGUaGGAGAGCaGCgGGUgGa- -3'
miRNA:   3'- -CAUGAGUA-CUUCUCGcCGaCCAgCag -5'
13961 3' -53 NC_003521.1 + 110420 0.68 0.966794
Target:  5'- -aGCgugagCGUGAgaacGGAGCGGC-GGUUGUUg -3'
miRNA:   3'- caUGa----GUACU----UCUCGCCGaCCAGCAG- -5'
13961 3' -53 NC_003521.1 + 95881 0.69 0.943975
Target:  5'- -gGCUgCGUGGAGAGaCGGCgGGgaaugaUCGUCu -3'
miRNA:   3'- caUGA-GUACUUCUC-GCCGaCC------AGCAG- -5'
13961 3' -53 NC_003521.1 + 167603 0.7 0.934527
Target:  5'- -cGCUCGUGGu-GGC-GUUGGUCGUCg -3'
miRNA:   3'- caUGAGUACUucUCGcCGACCAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.