Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13961 | 5' | -55.9 | NC_003521.1 | + | 211594 | 1.09 | 0.004556 |
Target: 5'- cUGGAGGCCCAGUAGAGGAUCUCCAUGa -3' miRNA: 3'- -ACCUCCGGGUCAUCUCCUAGAGGUAC- -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 17235 | 0.74 | 0.585172 |
Target: 5'- cGGAGGCCgaGGUGGAGGcgCgCCGUa -3' miRNA: 3'- aCCUCCGGg-UCAUCUCCuaGaGGUAc -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 86752 | 0.73 | 0.665227 |
Target: 5'- aGGAGGCUgGGcaccgAGAGGcgcgagagcuugAUCUCCAUGg -3' miRNA: 3'- aCCUCCGGgUCa----UCUCC------------UAGAGGUAC- -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 29134 | 0.69 | 0.832613 |
Target: 5'- cUGGAGGCCCuGUGGAuccuccgcGGcaacuUCUCCGc- -3' miRNA: 3'- -ACCUCCGGGuCAUCU--------CCu----AGAGGUac -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 27383 | 0.69 | 0.832613 |
Target: 5'- cGGGGGgCCAGgccacGGGGAUCU-CGUGg -3' miRNA: 3'- aCCUCCgGGUCau---CUCCUAGAgGUAC- -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 221758 | 0.69 | 0.856262 |
Target: 5'- ---cGGCCCAGcugGGAGGAcgggaUCUCCGUu -3' miRNA: 3'- accuCCGGGUCa--UCUCCU-----AGAGGUAc -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 148394 | 0.69 | 0.863764 |
Target: 5'- gGGAGGCUgGGggguGAGGG-CUCCAc- -3' miRNA: 3'- aCCUCCGGgUCau--CUCCUaGAGGUac -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 13899 | 0.69 | 0.863764 |
Target: 5'- gGGGGGCCCGGcgcGGAGGGgg-CCGc- -3' miRNA: 3'- aCCUCCGGGUCa--UCUCCUagaGGUac -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 216131 | 0.69 | 0.871066 |
Target: 5'- cGGAGGCCgCGGcAGAGGAaggCCAc- -3' miRNA: 3'- aCCUCCGG-GUCaUCUCCUagaGGUac -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 169981 | 0.69 | 0.871066 |
Target: 5'- gGGAGGCggCGGcGGGGGAcgcUUUCCAUGa -3' miRNA: 3'- aCCUCCGg-GUCaUCUCCU---AGAGGUAC- -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 103139 | 0.68 | 0.891718 |
Target: 5'- gGGAGaGCCCAGgggcAGcAGGcgcGUCUCCAc- -3' miRNA: 3'- aCCUC-CGGGUCa---UC-UCC---UAGAGGUac -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 212926 | 0.67 | 0.910405 |
Target: 5'- aGGAGGCgCuGUaAGAGGAcaagcccgcCUCCAUGc -3' miRNA: 3'- aCCUCCGgGuCA-UCUCCUa--------GAGGUAC- -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 150030 | 0.67 | 0.910405 |
Target: 5'- gGGGGGCUgGGgAGGGGGguaagggcUCUCCGUu -3' miRNA: 3'- aCCUCCGGgUCaUCUCCU--------AGAGGUAc -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 8634 | 0.67 | 0.921733 |
Target: 5'- cGGGGGCCCAuGgcgugGGAGGAcgguuuUCUCgAg- -3' miRNA: 3'- aCCUCCGGGU-Ca----UCUCCU------AGAGgUac -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 223927 | 0.67 | 0.927054 |
Target: 5'- uUGGAGGCgCGGccgAGGGGGUCgaggcggCCGc- -3' miRNA: 3'- -ACCUCCGgGUCa--UCUCCUAGa------GGUac -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 228893 | 0.67 | 0.927054 |
Target: 5'- aGGAgcaccagccgGGCCCGGcUGGGGGAcucgaUCUCCu-- -3' miRNA: 3'- aCCU----------CCGGGUC-AUCUCCU-----AGAGGuac -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 147866 | 0.67 | 0.927054 |
Target: 5'- gGGGGGCCCGaUGGugcuGGGAUUUUgGUGu -3' miRNA: 3'- aCCUCCGGGUcAUC----UCCUAGAGgUAC- -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 124276 | 0.67 | 0.932145 |
Target: 5'- cGGAGGCgCGGcuGAcGAUCUCCAg- -3' miRNA: 3'- aCCUCCGgGUCauCUcCUAGAGGUac -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 91214 | 0.67 | 0.937006 |
Target: 5'- cGuGGGCaCAGUAcGGGGAUC-CCAUGg -3' miRNA: 3'- aCcUCCGgGUCAU-CUCCUAGaGGUAC- -5' |
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13961 | 5' | -55.9 | NC_003521.1 | + | 34669 | 0.66 | 0.94164 |
Target: 5'- cGGAGGCCagcucGUAGAGGcaGUcCUCCu-- -3' miRNA: 3'- aCCUCCGGgu---CAUCUCC--UA-GAGGuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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