Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13961 | 5' | -55.9 | NC_003521.1 | + | 17373 | 0.66 | 0.946047 |
Target: 5'- cGGcGGCCCAGacucgAGAGGGaccgCUCCc-- -3' miRNA: 3'- aCCuCCGGGUCa----UCUCCUa---GAGGuac -5' |
|||||||
13961 | 5' | -55.9 | NC_003521.1 | + | 212267 | 0.66 | 0.946047 |
Target: 5'- cGGuGGCCggcgguaGGUAGAGGAUCaUCAg- -3' miRNA: 3'- aCCuCCGGg------UCAUCUCCUAGaGGUac -5' |
|||||||
13961 | 5' | -55.9 | NC_003521.1 | + | 110436 | 0.66 | 0.953024 |
Target: 5'- cGGAGcggcgguuguugguGCCCAGggGGAGGAauuccugCUCCAg- -3' miRNA: 3'- aCCUC--------------CGGGUCa-UCUCCUa------GAGGUac -5' |
|||||||
13961 | 5' | -55.9 | NC_003521.1 | + | 172269 | 0.66 | 0.954189 |
Target: 5'- cGGGGGCacagCUGGUGGGuguGGGUCUCCu-- -3' miRNA: 3'- aCCUCCG----GGUCAUCU---CCUAGAGGuac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home