miRNA display CGI


Results 41 - 60 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 3' -55.5 NC_003521.1 + 196314 0.66 0.955439
Target:  5'- aAGGCGGCcGGuGCUGGCCcuAgGCCGa -3'
miRNA:   3'- gUCCGUUGuCCuUGACUGGc-UgCGGU- -5'
13962 3' -55.5 NC_003521.1 + 135922 0.66 0.955439
Target:  5'- cCAGGCGACGGGGGCUG---GACuCCu -3'
miRNA:   3'- -GUCCGUUGUCCUUGACuggCUGcGGu -5'
13962 3' -55.5 NC_003521.1 + 131390 0.66 0.955439
Target:  5'- gAGGUGACGGGcgucAGCcugGACCGcauCGCCGu -3'
miRNA:   3'- gUCCGUUGUCC----UUGa--CUGGCu--GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 72256 0.66 0.955439
Target:  5'- uGGGCccCAGcGAGCUGcgcgucACgGACGCCGg -3'
miRNA:   3'- gUCCGuuGUC-CUUGAC------UGgCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 224013 0.66 0.955439
Target:  5'- -cGGCAGCGGcGGGCccggcggucggGGCgGGCGCCGu -3'
miRNA:   3'- guCCGUUGUC-CUUGa----------CUGgCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 166875 0.66 0.955439
Target:  5'- aGGGaCAGCAGcAGCaGGCCGucgGCGCCGu -3'
miRNA:   3'- gUCC-GUUGUCcUUGaCUGGC---UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 136090 0.66 0.955439
Target:  5'- uGGGC-ACGGGAGCguucgucGCCG-CGCCu -3'
miRNA:   3'- gUCCGuUGUCCUUGac-----UGGCuGCGGu -5'
13962 3' -55.5 NC_003521.1 + 153160 0.66 0.95506
Target:  5'- uCAGGUccuGCAGGAAC-GACuccacgcuguccuCGAUGCCGa -3'
miRNA:   3'- -GUCCGu--UGUCCUUGaCUG-------------GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 201279 0.67 0.951556
Target:  5'- -cGGCGuCGGGGccACcGACCuGCGCCAg -3'
miRNA:   3'- guCCGUuGUCCU--UGaCUGGcUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 55751 0.67 0.951556
Target:  5'- gCGGGCGGCAGcGAcagGCgcGGCCGGCGgUAc -3'
miRNA:   3'- -GUCCGUUGUC-CU---UGa-CUGGCUGCgGU- -5'
13962 3' -55.5 NC_003521.1 + 65501 0.67 0.951556
Target:  5'- gCAGGCGACcuucaucGAgcgcugucaGCUGGgCGACGCCGa -3'
miRNA:   3'- -GUCCGUUGuc-----CU---------UGACUgGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 4267 0.67 0.951556
Target:  5'- aAGGaCGGC-GGAGCcGACgagCGACGCCGa -3'
miRNA:   3'- gUCC-GUUGuCCUUGaCUG---GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 240037 0.67 0.951556
Target:  5'- -cGGCGuCGGGGccACcGACCuGCGCCAg -3'
miRNA:   3'- guCCGUuGUCCU--UGaCUGGcUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 30505 0.67 0.951556
Target:  5'- -cGGCAACcgcgcGGAcCUGcaGCgCGACGCCAa -3'
miRNA:   3'- guCCGUUGu----CCUuGAC--UG-GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 196115 0.67 0.951556
Target:  5'- gAGGCGACAGc-----GCUGACGCCAg -3'
miRNA:   3'- gUCCGUUGUCcuugacUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 233468 0.67 0.951556
Target:  5'- -uGGCGGCggacugucGGGAAC-GACCGACGgUAa -3'
miRNA:   3'- guCCGUUG--------UCCUUGaCUGGCUGCgGU- -5'
13962 3' -55.5 NC_003521.1 + 168495 0.67 0.951556
Target:  5'- uGGGCGGCGagacGGAgGCggagGACggCGACGCCAg -3'
miRNA:   3'- gUCCGUUGU----CCU-UGa---CUG--GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 33161 0.67 0.949121
Target:  5'- gGGGCGGCGGGcacggcggcagcaccGGCggcGCgGGCGCCAa -3'
miRNA:   3'- gUCCGUUGUCC---------------UUGac-UGgCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 233067 0.67 0.947453
Target:  5'- -cGGCGucuGCuGGGACUG-CCGcCGCCu -3'
miRNA:   3'- guCCGU---UGuCCUUGACuGGCuGCGGu -5'
13962 3' -55.5 NC_003521.1 + 65094 0.67 0.947453
Target:  5'- -cGGCGcCAGGAGgaaGAgCGGCGCCGa -3'
miRNA:   3'- guCCGUuGUCCUUga-CUgGCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.