Results 21 - 40 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13962 | 3' | -55.5 | NC_003521.1 | + | 147118 | 0.66 | 0.962557 |
Target: 5'- uGGGCGGgAGGGGCggaggcgagGACgaGGCGCCc -3' miRNA: 3'- gUCCGUUgUCCUUGa--------CUGg-CUGCGGu -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 33436 | 0.66 | 0.962557 |
Target: 5'- -cGGUucguGGAACgUGGCCGAgGCCGa -3' miRNA: 3'- guCCGuuguCCUUG-ACUGGCUgCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 229402 | 0.66 | 0.962557 |
Target: 5'- aCGGGUGGCGGGuACgggGACaCGGCGUa- -3' miRNA: 3'- -GUCCGUUGUCCuUGa--CUG-GCUGCGgu -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 150713 | 0.66 | 0.962557 |
Target: 5'- -cGGCGACuGGcuCUcGGCCGugGgCCAc -3' miRNA: 3'- guCCGUUGuCCuuGA-CUGGCugC-GGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 121332 | 0.66 | 0.962557 |
Target: 5'- -cGGCAGCuGGAguaccagcacACcuggGACCGGCGCa- -3' miRNA: 3'- guCCGUUGuCCU----------UGa---CUGGCUGCGgu -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 163478 | 0.66 | 0.962557 |
Target: 5'- cCAGGCcGCcGGAgcuACUGccgcuGCCGcCGCCAc -3' miRNA: 3'- -GUCCGuUGuCCU---UGAC-----UGGCuGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 212889 | 0.66 | 0.962221 |
Target: 5'- gCGGGCGACGGGggUgucggugGACucgaggaCGGCGCg- -3' miRNA: 3'- -GUCCGUUGUCCuuGa------CUG-------GCUGCGgu -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 105843 | 0.66 | 0.959104 |
Target: 5'- -cGGCGGCGGcGAcgacACggcGGCgGACGCCGa -3' miRNA: 3'- guCCGUUGUC-CU----UGa--CUGgCUGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 87310 | 0.66 | 0.959104 |
Target: 5'- gCAGGCGAUGGGuGCgguccacGCUGGCGCUg -3' miRNA: 3'- -GUCCGUUGUCCuUGac-----UGGCUGCGGu -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 133969 | 0.66 | 0.959104 |
Target: 5'- aCGGGCGuccauGCGcGGAcGCUGGCCG-CgGCCAa -3' miRNA: 3'- -GUCCGU-----UGU-CCU-UGACUGGCuG-CGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 43476 | 0.66 | 0.959104 |
Target: 5'- cCAGcGCGGCGGccguGCUGGCCGcgGCgGCCAa -3' miRNA: 3'- -GUC-CGUUGUCcu--UGACUGGC--UG-CGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 56886 | 0.66 | 0.959104 |
Target: 5'- gAGGUggaaAGCGaGAGCUGGCCGucgcgacaGCGCCGc -3' miRNA: 3'- gUCCG----UUGUcCUUGACUGGC--------UGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 222436 | 0.66 | 0.959104 |
Target: 5'- gGGGCcGCAcGGAccuGCUGGCCacgggGGCGCUg -3' miRNA: 3'- gUCCGuUGU-CCU---UGACUGG-----CUGCGGu -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 153694 | 0.66 | 0.959104 |
Target: 5'- gAGcGCGACcGGcugcuGCUGACC-ACGCCGg -3' miRNA: 3'- gUC-CGUUGuCCu----UGACUGGcUGCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 142620 | 0.66 | 0.959104 |
Target: 5'- gAGGCGGCGGcGGccGCggcGGCCGugGCg- -3' miRNA: 3'- gUCCGUUGUC-CU--UGa--CUGGCugCGgu -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 178852 | 0.66 | 0.958027 |
Target: 5'- gGGGCGACGGGAAagucagcgggcaguaGAgCGAgGCCGc -3' miRNA: 3'- gUCCGUUGUCCUUga-------------CUgGCUgCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 165887 | 0.66 | 0.957664 |
Target: 5'- uCGGGCGGCGGGuacaccaccccgcGCUGccggGCCGACuCCAc -3' miRNA: 3'- -GUCCGUUGUCCu------------UGAC----UGGCUGcGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 196314 | 0.66 | 0.955439 |
Target: 5'- aAGGCGGCcGGuGCUGGCCcuAgGCCGa -3' miRNA: 3'- gUCCGUUGuCCuUGACUGGc-UgCGGU- -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 42127 | 0.66 | 0.955439 |
Target: 5'- uGGGCAcCAGGcgcgagagcguGCUGACCGucaGCCu -3' miRNA: 3'- gUCCGUuGUCCu----------UGACUGGCug-CGGu -5' |
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13962 | 3' | -55.5 | NC_003521.1 | + | 135922 | 0.66 | 0.955439 |
Target: 5'- cCAGGCGACGGGGGCUG---GACuCCu -3' miRNA: 3'- -GUCCGUUGUCCUUGACuggCUGcGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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