miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 3' -55.5 NC_003521.1 + 203696 0.73 0.688894
Target:  5'- gAGGCGGCGGGGGCgcccgggccuUGugCGACgGCCu -3'
miRNA:   3'- gUCCGUUGUCCUUG----------ACugGCUG-CGGu -5'
13962 3' -55.5 NC_003521.1 + 137003 0.72 0.708569
Target:  5'- -cGGCAuCAGcgcGAGCUGGCCGAgGCCc -3'
miRNA:   3'- guCCGUuGUC---CUUGACUGGCUgCGGu -5'
13962 3' -55.5 NC_003521.1 + 128527 0.72 0.718317
Target:  5'- uGGGCAGguGcGGCUGGcCCGACGUCAg -3'
miRNA:   3'- gUCCGUUguCcUUGACU-GGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 78832 0.72 0.737594
Target:  5'- uGGGCGucaACGGGggUgcgacACCGGCGCCGa -3'
miRNA:   3'- gUCCGU---UGUCCuuGac---UGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 142095 0.72 0.737594
Target:  5'- gUAGGCGcgucGCAGGAACUGguGCUGuuGCCGc -3'
miRNA:   3'- -GUCCGU----UGUCCUUGAC--UGGCugCGGU- -5'
13962 3' -55.5 NC_003521.1 + 180062 0.72 0.744261
Target:  5'- gAGGCGGCGGGGauucucccgcggcgACUG-CCGcCGCCGu -3'
miRNA:   3'- gUCCGUUGUCCU--------------UGACuGGCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 87390 0.71 0.765827
Target:  5'- gAGGCGGC-GGAGgUGacGCCGACGCUc -3'
miRNA:   3'- gUCCGUUGuCCUUgAC--UGGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 120144 0.71 0.765827
Target:  5'- gGGGCGACgAGGAgaaccgacuGCgGACCGAgGCCc -3'
miRNA:   3'- gUCCGUUG-UCCU---------UGaCUGGCUgCGGu -5'
13962 3' -55.5 NC_003521.1 + 103908 0.71 0.76952
Target:  5'- uCAGGUAACGGGAGagauugagcacgucgUUGucgaccgcgaacACCGGCGCCAc -3'
miRNA:   3'- -GUCCGUUGUCCUU---------------GAC------------UGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 135934 0.71 0.775023
Target:  5'- -cGGCcGCGGGA--UGugCGACGCCu -3'
miRNA:   3'- guCCGuUGUCCUugACugGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 138738 0.71 0.775023
Target:  5'- aCGGGCGGCAGGuGGCaGAUgUGGCGCCGc -3'
miRNA:   3'- -GUCCGUUGUCC-UUGaCUG-GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 140716 0.71 0.784096
Target:  5'- aCGGGUGACGGGGACgGcACgGAgGCCGg -3'
miRNA:   3'- -GUCCGUUGUCCUUGaC-UGgCUgCGGU- -5'
13962 3' -55.5 NC_003521.1 + 71797 0.71 0.793038
Target:  5'- -cGGCGGCGGGcucgguGACgucGGCCGGCGUCGg -3'
miRNA:   3'- guCCGUUGUCC------UUGa--CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 110523 0.71 0.793038
Target:  5'- aCAGGUGGCAGGucuGCUGgaaggcggGCCGAUGCa- -3'
miRNA:   3'- -GUCCGUUGUCCu--UGAC--------UGGCUGCGgu -5'
13962 3' -55.5 NC_003521.1 + 128479 0.71 0.793038
Target:  5'- uGGGCAGCGGcGugagGCUGugCG-CGCCGg -3'
miRNA:   3'- gUCCGUUGUC-Cu---UGACugGCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 38330 0.7 0.810498
Target:  5'- aGGGCGAUggcguuuuAGGAACguucGCCGGCGUCAa -3'
miRNA:   3'- gUCCGUUG--------UCCUUGac--UGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 47859 0.7 0.818999
Target:  5'- aAGaGCAGCAGGAGgaGGacuCCGAcCGCCAc -3'
miRNA:   3'- gUC-CGUUGUCCUUgaCU---GGCU-GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 171475 0.7 0.818999
Target:  5'- gCGGGCGcacGCAGGAcuuGCagUGACgGACGCUg -3'
miRNA:   3'- -GUCCGU---UGUCCU---UG--ACUGgCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 65626 0.7 0.827338
Target:  5'- -cGGCccGCgAGGAGCUGACgCG-CGCCAg -3'
miRNA:   3'- guCCGu-UG-UCCUUGACUG-GCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 74159 0.7 0.827338
Target:  5'- gGGGCc-CAGGugccGCUGGCCGacuGCGCCGc -3'
miRNA:   3'- gUCCGuuGUCCu---UGACUGGC---UGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.