miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 3' -55.5 NC_003521.1 + 30401 1.09 0.005314
Target:  5'- aCAGGCAACAGGAACUGACCGACGCCAu -3'
miRNA:   3'- -GUCCGUUGUCCUUGACUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 141988 0.83 0.208896
Target:  5'- --uGCAGCGGGAGCUGGCCcGCGCCAa -3'
miRNA:   3'- gucCGUUGUCCUUGACUGGcUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 191034 0.82 0.241111
Target:  5'- uCGGGCGGCAGcGucuGCUGGCCGACGCuCAg -3'
miRNA:   3'- -GUCCGUUGUC-Cu--UGACUGGCUGCG-GU- -5'
13962 3' -55.5 NC_003521.1 + 226356 0.77 0.446356
Target:  5'- gCGGGUAgcgccGCGGGAGCggcGGCUGACGCCGc -3'
miRNA:   3'- -GUCCGU-----UGUCCUUGa--CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 125784 0.77 0.477204
Target:  5'- uCAGGCAGCcggccugcgaggcccAGGggUUGugCGugGCCGu -3'
miRNA:   3'- -GUCCGUUG---------------UCCuuGACugGCugCGGU- -5'
13962 3' -55.5 NC_003521.1 + 43772 0.77 0.482758
Target:  5'- gGGGCGGCAGGcGCUGACgGAUGUUg -3'
miRNA:   3'- gUCCGUUGUCCuUGACUGgCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 134994 0.76 0.492082
Target:  5'- -cGGUAGCAGGGGCaGGCCGugGCg- -3'
miRNA:   3'- guCCGUUGUCCUUGaCUGGCugCGgu -5'
13962 3' -55.5 NC_003521.1 + 181206 0.76 0.492082
Target:  5'- gGGGCucCAGGAACUGcgaugGCCGAuCGCCGu -3'
miRNA:   3'- gUCCGuuGUCCUUGAC-----UGGCU-GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 164829 0.76 0.520532
Target:  5'- gGGGgAGgAGGAACcggcGGCCGGCGCCAg -3'
miRNA:   3'- gUCCgUUgUCCUUGa---CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 238792 0.76 0.539851
Target:  5'- aCAGGUAGCAGcGGACgaguuguggGGCgCGACGCCGu -3'
miRNA:   3'- -GUCCGUUGUC-CUUGa--------CUG-GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 202523 0.76 0.539851
Target:  5'- aCAGGUAGCAGcGGACgaguuguggGGCgCGACGCCGu -3'
miRNA:   3'- -GUCCGUUGUC-CUUGa--------CUG-GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 17752 0.74 0.599049
Target:  5'- gAGGCcg-GGGAACUGGCCGuacCGCCGg -3'
miRNA:   3'- gUCCGuugUCCUUGACUGGCu--GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 219393 0.74 0.619036
Target:  5'- aCAGGCGACGGGcacGACgaGGCCGAguagcUGCCAg -3'
miRNA:   3'- -GUCCGUUGUCC---UUGa-CUGGCU-----GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 240432 0.74 0.649069
Target:  5'- gUAGGCAACGuacGCUcaGGCCGACGCCAu -3'
miRNA:   3'- -GUCCGUUGUccuUGA--CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 153879 0.74 0.649069
Target:  5'- -uGGC-GCAGGAGCUG-CUGAgCGCCAa -3'
miRNA:   3'- guCCGuUGUCCUUGACuGGCU-GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 200883 0.74 0.649069
Target:  5'- gUAGGCAACGuacGCUcaGGCCGACGCCAu -3'
miRNA:   3'- -GUCCGUUGUccuUGA--CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 131213 0.74 0.653069
Target:  5'- -cGGCGGCGGGGccaccaguaACUGcgugcgaccucgaccGCCGACGCCGu -3'
miRNA:   3'- guCCGUUGUCCU---------UGAC---------------UGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 44132 0.73 0.669039
Target:  5'- uGGGCGACggcccGGGAGCcGGCCGggGCGCCu -3'
miRNA:   3'- gUCCGUUG-----UCCUUGaCUGGC--UGCGGu -5'
13962 3' -55.5 NC_003521.1 + 203696 0.73 0.688894
Target:  5'- gAGGCGGCGGGGGCgcccgggccuUGugCGACgGCCu -3'
miRNA:   3'- gUCCGUUGUCCUUG----------ACugGCUG-CGGu -5'
13962 3' -55.5 NC_003521.1 + 104136 0.73 0.688894
Target:  5'- -uGGgGACAcgauGGAGCUGGcCCGGCGCCu -3'
miRNA:   3'- guCCgUUGU----CCUUGACU-GGCUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.