miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 3' -55.5 NC_003521.1 + 4126 0.69 0.873567
Target:  5'- aGGGUgggauACGGGAGCgGGCCGGCGgCu -3'
miRNA:   3'- gUCCGu----UGUCCUUGaCUGGCUGCgGu -5'
13962 3' -55.5 NC_003521.1 + 4267 0.67 0.951556
Target:  5'- aAGGaCGGC-GGAGCcGACgagCGACGCCGa -3'
miRNA:   3'- gUCC-GUUGuCCUUGaCUG---GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 4305 0.7 0.843499
Target:  5'- aAGGCAGagggacggcCGGGGGCUcGACCGuccaugccugGCGCCAc -3'
miRNA:   3'- gUCCGUU---------GUCCUUGA-CUGGC----------UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 5540 0.67 0.928791
Target:  5'- -cGGCAGCcGGcGC-GGCCGcCGCCAu -3'
miRNA:   3'- guCCGUUGuCCuUGaCUGGCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 6505 0.66 0.966115
Target:  5'- -cGGCGuccGCGGGAGCgccggucuccauucgGACCGcCGUCAu -3'
miRNA:   3'- guCCGU---UGUCCUUGa--------------CUGGCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 16770 0.68 0.904047
Target:  5'- cCAuGCAGCAGGucgguuuucagauGCUG-CCGGCGCCc -3'
miRNA:   3'- -GUcCGUUGUCCu------------UGACuGGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 17347 0.69 0.893967
Target:  5'- -cGGUGGCGGGAACgugGGUCGcCGCCAg -3'
miRNA:   3'- guCCGUUGUCCUUGa--CUGGCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 17752 0.74 0.599049
Target:  5'- gAGGCcg-GGGAACUGGCCGuacCGCCGg -3'
miRNA:   3'- gUCCGuugUCCUUGACUGGCu--GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 17768 0.69 0.866346
Target:  5'- cCGGGC--CGGGAACcgccgUGACCGgcgGCGCCGc -3'
miRNA:   3'- -GUCCGuuGUCCUUG-----ACUGGC---UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 18644 0.66 0.955439
Target:  5'- uCGGGgAGCAaGGugUGACUGugGUCGu -3'
miRNA:   3'- -GUCCgUUGUcCUugACUGGCugCGGU- -5'
13962 3' -55.5 NC_003521.1 + 22858 0.7 0.827338
Target:  5'- uCAGGCGaccGCAGGGGCcgucacggGugCGACGCg- -3'
miRNA:   3'- -GUCCGU---UGUCCUUGa-------CugGCUGCGgu -5'
13962 3' -55.5 NC_003521.1 + 25651 0.69 0.893967
Target:  5'- gCGGGUcugggAGCAGGGugU--CCGGCGCCGa -3'
miRNA:   3'- -GUCCG-----UUGUCCUugAcuGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 27437 0.68 0.912397
Target:  5'- cCAGGCAGCccAGGccgAAUUcGGCCGugaGCGCCAg -3'
miRNA:   3'- -GUCCGUUG--UCC---UUGA-CUGGC---UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 30401 1.09 0.005314
Target:  5'- aCAGGCAACAGGAACUGACCGACGCCAu -3'
miRNA:   3'- -GUCCGUUGUCCUUGACUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 30505 0.67 0.951556
Target:  5'- -cGGCAACcgcgcGGAcCUGcaGCgCGACGCCAa -3'
miRNA:   3'- guCCGUUGu----CCUuGAC--UG-GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 32348 0.68 0.923555
Target:  5'- --cGCAu--GGcGCUGGCCGugGCCAc -3'
miRNA:   3'- gucCGUuguCCuUGACUGGCugCGGU- -5'
13962 3' -55.5 NC_003521.1 + 32704 0.67 0.947031
Target:  5'- gGGGCuaauauagcuaggGugGGGggUUGG-CGACGCCAc -3'
miRNA:   3'- gUCCG-------------UugUCCuuGACUgGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 33161 0.67 0.949121
Target:  5'- gGGGCGGCGGGcacggcggcagcaccGGCggcGCgGGCGCCAa -3'
miRNA:   3'- gUCCGUUGUCC---------------UUGac-UGgCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 33436 0.66 0.962557
Target:  5'- -cGGUucguGGAACgUGGCCGAgGCCGa -3'
miRNA:   3'- guCCGuuguCCUUG-ACUGGCUgCGGU- -5'
13962 3' -55.5 NC_003521.1 + 33650 0.67 0.933307
Target:  5'- gGGGCGgccagcagaGCGGGAuccagcgACcGGCCGugGCCc -3'
miRNA:   3'- gUCCGU---------UGUCCU-------UGaCUGGCugCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.