miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 3' -55.5 NC_003521.1 + 87310 0.66 0.959104
Target:  5'- gCAGGCGAUGGGuGCgguccacGCUGGCGCUg -3'
miRNA:   3'- -GUCCGUUGUCCuUGac-----UGGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 163943 0.66 0.968844
Target:  5'- gAGGCgAGgAGGAGuCUcGGCCGcggACGCCGa -3'
miRNA:   3'- gUCCG-UUgUCCUU-GA-CUGGC---UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 117060 0.66 0.968844
Target:  5'- gAGGCGGCcgcGGAGCcGGCgGucACGCCGu -3'
miRNA:   3'- gUCCGUUGu--CCUUGaCUGgC--UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 229402 0.66 0.962557
Target:  5'- aCGGGUGGCGGGuACgggGACaCGGCGUa- -3'
miRNA:   3'- -GUCCGUUGUCCuUGa--CUG-GCUGCGgu -5'
13962 3' -55.5 NC_003521.1 + 133969 0.66 0.959104
Target:  5'- aCGGGCGuccauGCGcGGAcGCUGGCCG-CgGCCAa -3'
miRNA:   3'- -GUCCGU-----UGU-CCU-UGACUGGCuG-CGGU- -5'
13962 3' -55.5 NC_003521.1 + 18644 0.66 0.955439
Target:  5'- uCGGGgAGCAaGGugUGACUGugGUCGu -3'
miRNA:   3'- -GUCCgUUGUcCUugACUGGCugCGGU- -5'
13962 3' -55.5 NC_003521.1 + 155424 0.66 0.965802
Target:  5'- cCAGG-AGCuguGcGAGCUGGCCGAC-CCGc -3'
miRNA:   3'- -GUCCgUUGu--C-CUUGACUGGCUGcGGU- -5'
13962 3' -55.5 NC_003521.1 + 43476 0.66 0.959104
Target:  5'- cCAGcGCGGCGGccguGCUGGCCGcgGCgGCCAa -3'
miRNA:   3'- -GUC-CGUUGUCcu--UGACUGGC--UG-CGGU- -5'
13962 3' -55.5 NC_003521.1 + 212889 0.66 0.962221
Target:  5'- gCGGGCGACGGGggUgucggugGACucgaggaCGGCGCg- -3'
miRNA:   3'- -GUCCGUUGUCCuuGa------CUG-------GCUGCGgu -5'
13962 3' -55.5 NC_003521.1 + 131390 0.66 0.955439
Target:  5'- gAGGUGACGGGcgucAGCcugGACCGcauCGCCGu -3'
miRNA:   3'- gUCCGUUGUCC----UUGa--CUGGCu--GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 201557 0.66 0.970005
Target:  5'- --cGCGGCGaGAGCUGGcgcaggucgguggccCCGACGCCGg -3'
miRNA:   3'- gucCGUUGUcCUUGACU---------------GGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 65345 0.66 0.965802
Target:  5'- cCAGuGCAuGCAGGAcguGCUGuCCGgggagacggcGCGCCGc -3'
miRNA:   3'- -GUC-CGU-UGUCCU---UGACuGGC----------UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 103314 0.66 0.965802
Target:  5'- -cGGUAcuccaGCAGGcGCUGACgCGccaGCGCCGu -3'
miRNA:   3'- guCCGU-----UGUCCuUGACUG-GC---UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 165887 0.66 0.957664
Target:  5'- uCGGGCGGCGGGuacaccaccccgcGCUGccggGCCGACuCCAc -3'
miRNA:   3'- -GUCCGUUGUCCu------------UGAC----UGGCUGcGGU- -5'
13962 3' -55.5 NC_003521.1 + 153160 0.66 0.95506
Target:  5'- uCAGGUccuGCAGGAAC-GACuccacgcuguccuCGAUGCCGa -3'
miRNA:   3'- -GUCCGu--UGUCCUUGaCUG-------------GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 56886 0.66 0.959104
Target:  5'- gAGGUggaaAGCGaGAGCUGGCCGucgcgacaGCGCCGc -3'
miRNA:   3'- gUCCG----UUGUcCUUGACUGGC--------UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 187298 0.66 0.965802
Target:  5'- -cGGCAGCccgguGGGAGC-GGCCG-CGUCGg -3'
miRNA:   3'- guCCGUUG-----UCCUUGaCUGGCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 239758 0.66 0.970005
Target:  5'- --cGCGGCGaGAGCUGGcgcaggucgguggccCCGACGCCGg -3'
miRNA:   3'- gucCGUUGUcCUUGACU---------------GGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 150713 0.66 0.962557
Target:  5'- -cGGCGACuGGcuCUcGGCCGugGgCCAc -3'
miRNA:   3'- guCCGUUGuCCuuGA-CUGGCugC-GGU- -5'
13962 3' -55.5 NC_003521.1 + 178852 0.66 0.958027
Target:  5'- gGGGCGACGGGAAagucagcgggcaguaGAgCGAgGCCGc -3'
miRNA:   3'- gUCCGUUGUCCUUga-------------CUgGCUgCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.