miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 3' -55.5 NC_003521.1 + 38330 0.7 0.810498
Target:  5'- aGGGCGAUggcguuuuAGGAACguucGCCGGCGUCAa -3'
miRNA:   3'- gUCCGUUG--------UCCUUGac--UGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 137003 0.72 0.708569
Target:  5'- -cGGCAuCAGcgcGAGCUGGCCGAgGCCc -3'
miRNA:   3'- guCCGUuGUC---CUUGACUGGCUgCGGu -5'
13962 3' -55.5 NC_003521.1 + 128527 0.72 0.718317
Target:  5'- uGGGCAGguGcGGCUGGcCCGACGUCAg -3'
miRNA:   3'- gUCCGUUguCcUUGACU-GGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 180062 0.72 0.744261
Target:  5'- gAGGCGGCGGGGauucucccgcggcgACUG-CCGcCGCCGu -3'
miRNA:   3'- gUCCGUUGUCCU--------------UGACuGGCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 87390 0.71 0.765827
Target:  5'- gAGGCGGC-GGAGgUGacGCCGACGCUc -3'
miRNA:   3'- gUCCGUUGuCCUUgAC--UGGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 103908 0.71 0.76952
Target:  5'- uCAGGUAACGGGAGagauugagcacgucgUUGucgaccgcgaacACCGGCGCCAc -3'
miRNA:   3'- -GUCCGUUGUCCUU---------------GAC------------UGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 135934 0.71 0.775023
Target:  5'- -cGGCcGCGGGA--UGugCGACGCCu -3'
miRNA:   3'- guCCGuUGUCCUugACugGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 128479 0.71 0.793038
Target:  5'- uGGGCAGCGGcGugagGCUGugCG-CGCCGg -3'
miRNA:   3'- gUCCGUUGUC-Cu---UGACugGCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 110523 0.71 0.793038
Target:  5'- aCAGGUGGCAGGucuGCUGgaaggcggGCCGAUGCa- -3'
miRNA:   3'- -GUCCGUUGUCCu--UGAC--------UGGCUGCGgu -5'
13962 3' -55.5 NC_003521.1 + 104136 0.73 0.688894
Target:  5'- -uGGgGACAcgauGGAGCUGGcCCGGCGCCu -3'
miRNA:   3'- guCCgUUGU----CCUUGACU-GGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 200883 0.74 0.649069
Target:  5'- gUAGGCAACGuacGCUcaGGCCGACGCCAu -3'
miRNA:   3'- -GUCCGUUGUccuUGA--CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 219393 0.74 0.619036
Target:  5'- aCAGGCGACGGGcacGACgaGGCCGAguagcUGCCAg -3'
miRNA:   3'- -GUCCGUUGUCC---UUGa-CUGGCU-----GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 191034 0.82 0.241111
Target:  5'- uCGGGCGGCAGcGucuGCUGGCCGACGCuCAg -3'
miRNA:   3'- -GUCCGUUGUC-Cu--UGACUGGCUGCG-GU- -5'
13962 3' -55.5 NC_003521.1 + 226356 0.77 0.446356
Target:  5'- gCGGGUAgcgccGCGGGAGCggcGGCUGACGCCGc -3'
miRNA:   3'- -GUCCGU-----UGUCCUUGa--CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 125784 0.77 0.477204
Target:  5'- uCAGGCAGCcggccugcgaggcccAGGggUUGugCGugGCCGu -3'
miRNA:   3'- -GUCCGUUG---------------UCCuuGACugGCugCGGU- -5'
13962 3' -55.5 NC_003521.1 + 134994 0.76 0.492082
Target:  5'- -cGGUAGCAGGGGCaGGCCGugGCg- -3'
miRNA:   3'- guCCGUUGUCCUUGaCUGGCugCGgu -5'
13962 3' -55.5 NC_003521.1 + 181206 0.76 0.492082
Target:  5'- gGGGCucCAGGAACUGcgaugGCCGAuCGCCGu -3'
miRNA:   3'- gUCCGuuGUCCUUGAC-----UGGCU-GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 164829 0.76 0.520532
Target:  5'- gGGGgAGgAGGAACcggcGGCCGGCGCCAg -3'
miRNA:   3'- gUCCgUUgUCCUUGa---CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 238792 0.76 0.539851
Target:  5'- aCAGGUAGCAGcGGACgaguuguggGGCgCGACGCCGu -3'
miRNA:   3'- -GUCCGUUGUC-CUUGa--------CUG-GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 17752 0.74 0.599049
Target:  5'- gAGGCcg-GGGAACUGGCCGuacCGCCGg -3'
miRNA:   3'- gUCCGuugUCCUUGACUGGCu--GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.