miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 3' -55.5 NC_003521.1 + 30401 1.09 0.005314
Target:  5'- aCAGGCAACAGGAACUGACCGACGCCAu -3'
miRNA:   3'- -GUCCGUUGUCCUUGACUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 239564 0.7 0.851307
Target:  5'- uGGGCuccuGGCAGGAGCUGgaaaacuacgaGCCGuucgccucgGCGCCAc -3'
miRNA:   3'- gUCCG----UUGUCCUUGAC-----------UGGC---------UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 116932 0.69 0.866346
Target:  5'- aCGGGCAACAGcggcggcuggaGAGCgagaGGCCGGCGUa- -3'
miRNA:   3'- -GUCCGUUGUC-----------CUUGa---CUGGCUGCGgu -5'
13962 3' -55.5 NC_003521.1 + 201557 0.66 0.970005
Target:  5'- --cGCGGCGaGAGCUGGcgcaggucgguggccCCGACGCCGg -3'
miRNA:   3'- gucCGUUGUcCUUGACU---------------GGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 153879 0.74 0.649069
Target:  5'- -uGGC-GCAGGAGCUG-CUGAgCGCCAa -3'
miRNA:   3'- guCCGuUGUCCUUGACuGGCU-GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 131213 0.74 0.653069
Target:  5'- -cGGCGGCGGGGccaccaguaACUGcgugcgaccucgaccGCCGACGCCGu -3'
miRNA:   3'- guCCGUUGUCCU---------UGAC---------------UGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 203696 0.73 0.688894
Target:  5'- gAGGCGGCGGGGGCgcccgggccuUGugCGACgGCCu -3'
miRNA:   3'- gUCCGUUGUCCUUG----------ACugGCUG-CGGu -5'
13962 3' -55.5 NC_003521.1 + 69472 0.73 0.688894
Target:  5'- -cGGCGGCGGGAG-UGccGCCGACGUCGg -3'
miRNA:   3'- guCCGUUGUCCUUgAC--UGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 120144 0.71 0.765827
Target:  5'- gGGGCGACgAGGAgaaccgacuGCgGACCGAgGCCc -3'
miRNA:   3'- gUCCGUUG-UCCU---------UGaCUGGCUgCGGu -5'
13962 3' -55.5 NC_003521.1 + 22858 0.7 0.827338
Target:  5'- uCAGGCGaccGCAGGGGCcgucacggGugCGACGCg- -3'
miRNA:   3'- -GUCCGU---UGUCCUUGa-------CugGCUGCGgu -5'
13962 3' -55.5 NC_003521.1 + 140716 0.71 0.784096
Target:  5'- aCGGGUGACGGGGACgGcACgGAgGCCGg -3'
miRNA:   3'- -GUCCGUUGUCCUUGaC-UGgCUgCGGU- -5'
13962 3' -55.5 NC_003521.1 + 142095 0.72 0.737594
Target:  5'- gUAGGCGcgucGCAGGAACUGguGCUGuuGCCGc -3'
miRNA:   3'- -GUCCGU----UGUCCUUGAC--UGGCugCGGU- -5'
13962 3' -55.5 NC_003521.1 + 43772 0.77 0.482758
Target:  5'- gGGGCGGCAGGcGCUGACgGAUGUUg -3'
miRNA:   3'- gUCCGUUGUCCuUGACUGgCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 71797 0.71 0.793038
Target:  5'- -cGGCGGCGGGcucgguGACgucGGCCGGCGUCGg -3'
miRNA:   3'- guCCGUUGUCC------UUGa--CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 202523 0.76 0.539851
Target:  5'- aCAGGUAGCAGcGGACgaguuguggGGCgCGACGCCGu -3'
miRNA:   3'- -GUCCGUUGUC-CUUGa--------CUG-GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 78832 0.72 0.737594
Target:  5'- uGGGCGucaACGGGggUgcgacACCGGCGCCGa -3'
miRNA:   3'- gUCCGU---UGUCCuuGac---UGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 47859 0.7 0.818999
Target:  5'- aAGaGCAGCAGGAGgaGGacuCCGAcCGCCAc -3'
miRNA:   3'- gUC-CGUUGUCCUUgaCU---GGCU-GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 219004 0.69 0.858925
Target:  5'- --aGCAugGGGGACcGucCCGACGCCGc -3'
miRNA:   3'- gucCGUugUCCUUGaCu-GGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 240432 0.74 0.649069
Target:  5'- gUAGGCAACGuacGCUcaGGCCGACGCCAu -3'
miRNA:   3'- -GUCCGUUGUccuUGA--CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 44132 0.73 0.669039
Target:  5'- uGGGCGACggcccGGGAGCcGGCCGggGCGCCu -3'
miRNA:   3'- gUCCGUUG-----UCCUUGaCUGGC--UGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.