miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 3' -55.5 NC_003521.1 + 240432 0.74 0.649069
Target:  5'- gUAGGCAACGuacGCUcaGGCCGACGCCAu -3'
miRNA:   3'- -GUCCGUUGUccuUGA--CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 240311 0.68 0.91809
Target:  5'- gCAGGCGccaucgGCGGaGGACcGcCCGGCGCCc -3'
miRNA:   3'- -GUCCGU------UGUC-CUUGaCuGGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 240037 0.67 0.951556
Target:  5'- -cGGCGuCGGGGccACcGACCuGCGCCAg -3'
miRNA:   3'- guCCGUuGUCCU--UGaCUGGcUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 239957 0.68 0.925676
Target:  5'- -cGGCGACGGGAcacgaaccGCUG-CCGuccccgggagccacgGCGCCGc -3'
miRNA:   3'- guCCGUUGUCCU--------UGACuGGC---------------UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 239842 0.68 0.917531
Target:  5'- -cGGCccAGCGGGAGCaGACCGccggccucucguuGCGCCc -3'
miRNA:   3'- guCCG--UUGUCCUUGaCUGGC-------------UGCGGu -5'
13962 3' -55.5 NC_003521.1 + 239758 0.66 0.970005
Target:  5'- --cGCGGCGaGAGCUGGcgcaggucgguggccCCGACGCCGg -3'
miRNA:   3'- gucCGUUGUcCUUGACU---------------GGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 239564 0.7 0.851307
Target:  5'- uGGGCuccuGGCAGGAGCUGgaaaacuacgaGCCGuucgccucgGCGCCAc -3'
miRNA:   3'- gUCCG----UUGUCCUUGAC-----------UGGC---------UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 238792 0.76 0.539851
Target:  5'- aCAGGUAGCAGcGGACgaguuguggGGCgCGACGCCGu -3'
miRNA:   3'- -GUCCGUUGUC-CUUGa--------CUG-GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 235445 0.67 0.928277
Target:  5'- aGGGCGu--GGGAUuccaccaUGACgCGACGCCAa -3'
miRNA:   3'- gUCCGUuguCCUUG-------ACUG-GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 233468 0.67 0.951556
Target:  5'- -uGGCGGCggacugucGGGAAC-GACCGACGgUAa -3'
miRNA:   3'- guCCGUUG--------UCCUUGaCUGGCUGCgGU- -5'
13962 3' -55.5 NC_003521.1 + 233278 0.67 0.943128
Target:  5'- -cGGCAGCuGGAcggcgucaagGCcauCCGGCGCCAg -3'
miRNA:   3'- guCCGUUGuCCU----------UGacuGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 233067 0.67 0.947453
Target:  5'- -cGGCGucuGCuGGGACUG-CCGcCGCCu -3'
miRNA:   3'- guCCGU---UGuCCUUGACuGGCuGCGGu -5'
13962 3' -55.5 NC_003521.1 + 232214 0.67 0.943128
Target:  5'- gCGGGUggUGGuGGCUGugCGGCGUCu -3'
miRNA:   3'- -GUCCGuuGUCcUUGACugGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 229402 0.66 0.962557
Target:  5'- aCGGGUGGCGGGuACgggGACaCGGCGUa- -3'
miRNA:   3'- -GUCCGUUGUCCuUGa--CUG-GCUGCGgu -5'
13962 3' -55.5 NC_003521.1 + 227886 0.68 0.912397
Target:  5'- uCGGGCcGCcguguuGGAggGCcGACCGGCGCCc -3'
miRNA:   3'- -GUCCGuUGu-----CCU--UGaCUGGCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 226585 0.69 0.893967
Target:  5'- uCGGGCAGCAGGAucAC-GGCguagcccagCGGCGUCAg -3'
miRNA:   3'- -GUCCGUUGUCCU--UGaCUG---------GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 226356 0.77 0.446356
Target:  5'- gCGGGUAgcgccGCGGGAGCggcGGCUGACGCCGc -3'
miRNA:   3'- -GUCCGU-----UGUCCUUGa--CUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 225860 0.68 0.906478
Target:  5'- gCAGGCGGCc-GAGCgcgaGGCCGccgaGCGCCAg -3'
miRNA:   3'- -GUCCGUUGucCUUGa---CUGGC----UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 225088 0.67 0.928791
Target:  5'- cCGGGCGcaccuGCAGGAACcaguUGugCGGgaUGCCGa -3'
miRNA:   3'- -GUCCGU-----UGUCCUUG----ACugGCU--GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 224013 0.66 0.955439
Target:  5'- -cGGCAGCGGcGGGCccggcggucggGGCgGGCGCCGu -3'
miRNA:   3'- guCCGUUGUC-CUUGa----------CUGgCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.