miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 3' -55.5 NC_003521.1 + 38330 0.7 0.810498
Target:  5'- aGGGCGAUggcguuuuAGGAACguucGCCGGCGUCAa -3'
miRNA:   3'- gUCCGUUG--------UCCUUGac--UGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 39851 0.67 0.933797
Target:  5'- cCAGG--GCAGGAcC--GCCGACGCCGg -3'
miRNA:   3'- -GUCCguUGUCCUuGacUGGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 39881 0.68 0.900333
Target:  5'- uCGGGCGccguACAGGGugUuGGCCGACuGCgGg -3'
miRNA:   3'- -GUCCGU----UGUCCUugA-CUGGCUG-CGgU- -5'
13962 3' -55.5 NC_003521.1 + 41067 0.68 0.900334
Target:  5'- gAGGCGAau--AGCUGACCG-CGCCGg -3'
miRNA:   3'- gUCCGUUguccUUGACUGGCuGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 42127 0.66 0.955439
Target:  5'- uGGGCAcCAGGcgcgagagcguGCUGACCGucaGCCu -3'
miRNA:   3'- gUCCGUuGUCCu----------UGACUGGCug-CGGu -5'
13962 3' -55.5 NC_003521.1 + 43476 0.66 0.959104
Target:  5'- cCAGcGCGGCGGccguGCUGGCCGcgGCgGCCAa -3'
miRNA:   3'- -GUC-CGUUGUCcu--UGACUGGC--UG-CGGU- -5'
13962 3' -55.5 NC_003521.1 + 43772 0.77 0.482758
Target:  5'- gGGGCGGCAGGcGCUGACgGAUGUUg -3'
miRNA:   3'- gUCCGUUGUCCuUGACUGgCUGCGGu -5'
13962 3' -55.5 NC_003521.1 + 44132 0.73 0.669039
Target:  5'- uGGGCGACggcccGGGAGCcGGCCGggGCGCCu -3'
miRNA:   3'- gUCCGUUG-----UCCUUGaCUGGC--UGCGGu -5'
13962 3' -55.5 NC_003521.1 + 45301 0.69 0.893967
Target:  5'- uGGGC--CAGGAgccggagcccgaGCUGGCCGACgGCUAc -3'
miRNA:   3'- gUCCGuuGUCCU------------UGACUGGCUG-CGGU- -5'
13962 3' -55.5 NC_003521.1 + 46447 0.67 0.928791
Target:  5'- gGGGCuGCGGGGGCUGGUCGGCcucGUCGu -3'
miRNA:   3'- gUCCGuUGUCCUUGACUGGCUG---CGGU- -5'
13962 3' -55.5 NC_003521.1 + 47859 0.7 0.818999
Target:  5'- aAGaGCAGCAGGAGgaGGacuCCGAcCGCCAc -3'
miRNA:   3'- gUC-CGUUGUCCUUgaCU---GGCU-GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 55751 0.67 0.951556
Target:  5'- gCGGGCGGCAGcGAcagGCgcGGCCGGCGgUAc -3'
miRNA:   3'- -GUCCGUUGUC-CU---UGa-CUGGCUGCgGU- -5'
13962 3' -55.5 NC_003521.1 + 56699 0.69 0.887381
Target:  5'- cCAGGCAGC-GGAugacGCUGGucgcgUCGACGUCGa -3'
miRNA:   3'- -GUCCGUUGuCCU----UGACU-----GGCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 56886 0.66 0.959104
Target:  5'- gAGGUggaaAGCGaGAGCUGGCCGucgcgacaGCGCCGc -3'
miRNA:   3'- gUCCG----UUGUcCUUGACUGGC--------UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 60981 0.67 0.943128
Target:  5'- aGGGCAGCGGcGugguGC-GACCcGCGCCGc -3'
miRNA:   3'- gUCCGUUGUC-Cu---UGaCUGGcUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 63226 0.68 0.923555
Target:  5'- -cGGCAGC-GGAAC-GGCCGgaaccggcgGCGCCGc -3'
miRNA:   3'- guCCGUUGuCCUUGaCUGGC---------UGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 63288 0.69 0.858925
Target:  5'- gGGuGCAGCAGcuGCUGAUCcACGCCAu -3'
miRNA:   3'- gUC-CGUUGUCcuUGACUGGcUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 63949 0.7 0.835507
Target:  5'- -cGGCugAGCGuGGAgcuGCUGGCgCGGCGCCAu -3'
miRNA:   3'- guCCG--UUGU-CCU---UGACUG-GCUGCGGU- -5'
13962 3' -55.5 NC_003521.1 + 64944 0.67 0.938576
Target:  5'- aAGGaauGGCAGGAGgaGGCCGAgaagcUGCCGg -3'
miRNA:   3'- gUCCg--UUGUCCUUgaCUGGCU-----GCGGU- -5'
13962 3' -55.5 NC_003521.1 + 65094 0.67 0.947453
Target:  5'- -cGGCGcCAGGAGgaaGAgCGGCGCCGa -3'
miRNA:   3'- guCCGUuGUCCUUga-CUgGCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.