miRNA display CGI


Results 41 - 60 of 197 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13962 5' -61 NC_003521.1 + 70564 0.67 0.724742
Target:  5'- uGCUgGGCGACCuGCaCCgcuuucucuUCGGCGCcgaccUGCg -3'
miRNA:   3'- -CGA-CCGUUGGuCG-GG---------AGCCGCG-----ACGa -5'
13962 5' -61 NC_003521.1 + 70843 0.69 0.609082
Target:  5'- aGCUcGGCGACCGGCUCUaccaGCGCuuucUGCg -3'
miRNA:   3'- -CGA-CCGUUGGUCGGGAgc--CGCG----ACGa -5'
13962 5' -61 NC_003521.1 + 71017 0.66 0.761644
Target:  5'- cGCUGGCuggaGACCGGCggaggauagucCCUCGaGCGCccaaaGCg -3'
miRNA:   3'- -CGACCG----UUGGUCG-----------GGAGC-CGCGa----CGa -5'
13962 5' -61 NC_003521.1 + 71020 0.76 0.260106
Target:  5'- aGCUGGUGAUCGGCCg-CGGCGC-GCUg -3'
miRNA:   3'- -CGACCGUUGGUCGGgaGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 71177 0.79 0.162647
Target:  5'- uGCUGGCGcugaCGGCUCUgaCGGCGCUGCUg -3'
miRNA:   3'- -CGACCGUug--GUCGGGA--GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 73140 0.66 0.769736
Target:  5'- gGCgggGGCAGCggCGGCggcgccgCCUCGGC-CUGCg -3'
miRNA:   3'- -CGa--CCGUUG--GUCG-------GGAGCCGcGACGa -5'
13962 5' -61 NC_003521.1 + 74172 0.66 0.761644
Target:  5'- cGCUGGcCGACUGcGCCg-CGGCGCccgGCg -3'
miRNA:   3'- -CGACC-GUUGGU-CGGgaGCCGCGa--CGa -5'
13962 5' -61 NC_003521.1 + 74835 0.66 0.788259
Target:  5'- cGCgacGGCGuCCcGCCCUCa-CGCUGCa -3'
miRNA:   3'- -CGa--CCGUuGGuCGGGAGccGCGACGa -5'
13962 5' -61 NC_003521.1 + 75522 0.74 0.353531
Target:  5'- uGCaUGuGCAGCCGGCCCuccUCGGCG-UGCa -3'
miRNA:   3'- -CG-AC-CGUUGGUCGGG---AGCCGCgACGa -5'
13962 5' -61 NC_003521.1 + 75815 0.72 0.442066
Target:  5'- cGCUGGCGuaGCC-GCCgC-CGGCGCcGCUg -3'
miRNA:   3'- -CGACCGU--UGGuCGG-GaGCCGCGaCGA- -5'
13962 5' -61 NC_003521.1 + 77694 0.76 0.272113
Target:  5'- cGCUGGCGAagaCAGCCguggCGGCGUUGUUg -3'
miRNA:   3'- -CGACCGUUg--GUCGGga--GCCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 78224 0.68 0.686687
Target:  5'- cCUGaGCGACgGGCaCCUUGcagaaGCGCUGCa -3'
miRNA:   3'- cGAC-CGUUGgUCG-GGAGC-----CGCGACGa -5'
13962 5' -61 NC_003521.1 + 79486 0.67 0.696282
Target:  5'- cGCgGGCAuCUgguGCCCUCGGgcaacgUGCUGCg -3'
miRNA:   3'- -CGaCCGUuGGu--CGGGAGCC------GCGACGa -5'
13962 5' -61 NC_003521.1 + 79519 0.67 0.704875
Target:  5'- uGCUGGUGGgCAGCggaaagcaagcucCCUCGcUGCUGCUa -3'
miRNA:   3'- -CGACCGUUgGUCG-------------GGAGCcGCGACGA- -5'
13962 5' -61 NC_003521.1 + 79621 0.75 0.3108
Target:  5'- uGCcggGGCGACCgcGGCgCCUCGGCGUcgucUGCUg -3'
miRNA:   3'- -CGa--CCGUUGG--UCG-GGAGCCGCG----ACGA- -5'
13962 5' -61 NC_003521.1 + 80866 0.69 0.618798
Target:  5'- gGCUgGGUAGCUGGCacuCCUCGGUGCgGUg -3'
miRNA:   3'- -CGA-CCGUUGGUCG---GGAGCCGCGaCGa -5'
13962 5' -61 NC_003521.1 + 83217 0.68 0.647976
Target:  5'- cGCUGGgGuACacgguGCCCUCGGCGCa--- -3'
miRNA:   3'- -CGACCgU-UGgu---CGGGAGCCGCGacga -5'
13962 5' -61 NC_003521.1 + 84969 0.69 0.583906
Target:  5'- cCUGGCAccggagGCCGGCCUggaggUgugcacgcagcugcuGGCGCUGCUg -3'
miRNA:   3'- cGACCGU------UGGUCGGGa----G---------------CCGCGACGA- -5'
13962 5' -61 NC_003521.1 + 86018 0.75 0.310801
Target:  5'- cGCUGGCcACCucgcucauGGCCaaguucgCGGCGCUGCa -3'
miRNA:   3'- -CGACCGuUGG--------UCGGga-----GCCGCGACGa -5'
13962 5' -61 NC_003521.1 + 86234 0.7 0.55132
Target:  5'- uGCUGGCcACUaAGCUCUCGGaGgUGCUg -3'
miRNA:   3'- -CGACCGuUGG-UCGGGAGCCgCgACGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.